DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and LGR6

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_001017403.1 Gene:LGR6 / 59352 HGNCID:19719 Length:967 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380
LRR_8 129..187 CDD:290566
leucine-rich repeat 131..153 CDD:275380
leucine-rich repeat 154..176 CDD:275380
leucine-rich repeat 177..199 CDD:275380
LRR_8 198..256 CDD:290566
leucine-rich repeat 200..222 CDD:275380
leucine-rich repeat 223..245 CDD:275380
LRR_8 267..325 CDD:290566
leucine-rich repeat 269..289 CDD:275380
leucine-rich repeat 292..314 CDD:275380
leucine-rich repeat 315..337 CDD:275380
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
LGR6NP_001017403.1 LRRNT 34..68 CDD:214470
LRR_RI <57..199 CDD:238064
leucine-rich repeat 70..91 CDD:275380
LRR 1 91..112
LRR_8 92..150 CDD:290566
leucine-rich repeat 92..115 CDD:275380
LRR 2 115..136
leucine-rich repeat 116..139 CDD:275380
LRR_RI 131..392 CDD:238064
LRR 3 139..160
leucine-rich repeat 140..163 CDD:275380
LRR 4 163..186
leucine-rich repeat 164..187 CDD:275380
LRR_8 186..246 CDD:290566
LRR 5 187..208
leucine-rich repeat 188..211 CDD:275380
LRR 6 211..232
leucine-rich repeat 212..235 CDD:275380
LRR 7 235..256
leucine-rich repeat 236..258 CDD:275380
LRR_8 258..314 CDD:290566
LRR 8 258..279
leucine-rich repeat 259..282 CDD:275380
LRR 9 282..303
leucine-rich repeat 283..304 CDD:275380
LRR 10 306..328
LRR 11 329..350
leucine-rich repeat 330..344 CDD:275378
LRR 12 353..374
leucine-rich repeat 354..399 CDD:275380
LRR_8 375..434 CDD:290566
LRR 13 375..396
leucine-rich repeat 376..390 CDD:275378
LRR 14 399..420
leucine-rich repeat 400..423 CDD:275380
LRR 15 423..443
leucine-rich repeat 424..444 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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