DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and Shoc2

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_001161977.1 Gene:Shoc2 / 56392 MGIID:1927197 Length:582 Species:Mus musculus


Alignment Length:395 Identity:129/395 - (32%)
Similarity:201/395 - (50%) Gaps:30/395 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 RQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKNFFRLHRLRKLGLSDNEIGRLPP 77
            :::..:|.||..|.::|..:.|.. :|..|:|..|.|..:.|:...|.:|..|.:.:|:|.:||.
Mouse   169 KKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTVEKDIKNLPKLSMLSIRENKIKQLPA 232

  Fly    78 DIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLT 142
            :|....||:.|||:.|.:..:|.:|.:...:...|...|.:..||.....|.:|..|||....|:
Mouse   233 EIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPDTIGNLSSLNRLGLRYNRLS 297

  Fly   143 TLPADFGSLTQLESLELRENLLKHLPET-ISQLTKLKRLDLGDNEIEDLPPYLG--YLPGLHELW 204
            .:|......:.||.|.|..|.:..|||: :|.|.||..|.|..|..: |.|..|  ....::.|.
Mouse   298 AIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQ-LYPVGGPSQFSTIYSLN 361

  Fly   205 LDH------------------------NQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVS 245
            ::|                        |||..||.:.|..|.:..|:::.|:|.::|.::|||||
Mouse   362 MEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS 426

  Fly   246 LTDLDLAQNLLEALPDGIAKLSRLTILKLDQNRLQRLNDTLGNCENMQELILTENFLSELPASIG 310
            |..|.|:.|||:.||.|:..|.:|..|.|::|:|:.|.:.:...:::|:|:||.|.||.||..||
Mouse   427 LEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLSTLPRGIG 491

  Fly   311 QMTKLNNLNVDRNALEYLPLEIGQCANLGVLSLRDN-KLKKLPPELGNCTVLHVLDVSGNQLLYL 374
            .:|.|.:|.:..|.|.:||.|||...||..|.|.|| .|..||.||..|:.|.::.:....|.:|
Mouse   492 HLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHL 556

  Fly   375 PYSLV 379
            |..:|
Mouse   557 PPQIV 561

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 90/296 (30%)
leucine-rich repeat 18..38 CDD:275380 6/19 (32%)
LRR_8 37..95 CDD:290566 20/57 (35%)
leucine-rich repeat 39..61 CDD:275380 7/21 (33%)
leucine-rich repeat 62..84 CDD:275380 7/21 (33%)
LRR_8 84..138 CDD:290566 17/53 (32%)
leucine-rich repeat 85..107 CDD:275380 7/21 (33%)
leucine-rich repeat 108..130 CDD:275380 5/21 (24%)
LRR_8 129..187 CDD:290566 21/58 (36%)
leucine-rich repeat 131..153 CDD:275380 6/21 (29%)
leucine-rich repeat 154..176 CDD:275380 10/22 (45%)
leucine-rich repeat 177..199 CDD:275380 7/23 (30%)
LRR_8 198..256 CDD:290566 22/81 (27%)
leucine-rich repeat 200..222 CDD:275380 8/45 (18%)
leucine-rich repeat 223..245 CDD:275380 7/21 (33%)
LRR_8 267..325 CDD:290566 21/57 (37%)
leucine-rich repeat 269..289 CDD:275380 6/19 (32%)
leucine-rich repeat 292..314 CDD:275380 11/21 (52%)
leucine-rich repeat 315..337 CDD:275380 9/21 (43%)
LRR_4 337..375 CDD:289563 14/38 (37%)
leucine-rich repeat 361..382 CDD:275380 5/19 (26%)
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
Shoc2NP_001161977.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..88
LRR 1 101..122
leucine-rich repeat 104..124 CDD:275380
PLN00113 <115..>483 CDD:215061 96/315 (30%)
LRR 2 124..145
leucine-rich repeat 125..147 CDD:275380
LRR 3 147..169 129/395 (33%)