DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and shoc2

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_001038251.1 Gene:shoc2 / 555476 ZFINID:ZDB-GENE-050208-523 Length:561 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380
LRR_8 129..187 CDD:290566
leucine-rich repeat 131..153 CDD:275380
leucine-rich repeat 154..176 CDD:275380
leucine-rich repeat 177..199 CDD:275380
LRR_8 198..256 CDD:290566
leucine-rich repeat 200..222 CDD:275380
leucine-rich repeat 223..245 CDD:275380
LRR_8 267..325 CDD:290566
leucine-rich repeat 269..289 CDD:275380
leucine-rich repeat 292..314 CDD:275380
leucine-rich repeat 315..337 CDD:275380
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
shoc2NP_001038251.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..67
LRR 1 80..101
leucine-rich repeat 83..103 CDD:275380
LRR_8 102..160 CDD:290566
LRR 2 103..124
leucine-rich repeat 104..126 CDD:275380
LRR_RI <124..229 CDD:238064
LRR 3 126..148
leucine-rich repeat 127..149 CDD:275380
LRR 4 149..170
leucine-rich repeat 150..172 CDD:275380
LRR_8 171..229 CDD:290566
LRR 5 172..193
leucine-rich repeat 173..195 CDD:275380
LRR 6 195..216
leucine-rich repeat 196..218 CDD:275380
LRR 7 218..239
leucine-rich repeat 219..241 CDD:275380
LRR 8 241..262
leucine-rich repeat 242..264 CDD:275380
LRR 9 264..286
leucine-rich repeat 265..311 CDD:275380
LRR_RI 268..483 CDD:238064
LRR 10 287..308
LRR 11 311..332
leucine-rich repeat 312..359 CDD:275380
leucine-rich repeat 316..335 CDD:275380
LRR 12 335..356
LRR 13 359..379
leucine-rich repeat 360..382 CDD:275380
LRR_8 381..439 CDD:290566
LRR 14 382..403
leucine-rich repeat 383..405 CDD:275380
LRR 15 405..427
leucine-rich repeat 406..428 CDD:275380
LRR_8 427..485 CDD:290566
LRR 16 428..449
leucine-rich repeat 429..451 CDD:275380
LRR 17 451..473
leucine-rich repeat 452..474 CDD:275380
LRR 18 474..495
leucine-rich repeat 475..498 CDD:275380
LRR 19 497..519
LRR 20 521..542
leucine-rich repeat 522..542 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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