DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrib and lrrc1

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_001013463.1 Gene:lrrc1 / 541316 ZFINID:ZDB-GENE-050320-1 Length:526 Species:Danio rerio


Alignment Length:566 Identity:279/566 - (49%)
Similarity:375/566 - (66%) Gaps:56/566 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKCIPIFKGCNRQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKNFFRLHRLRKL 65
            ||.|||::: |||.:|.:|:|||||..||:||.||..:||||.||||.:|||||.||.|.:||||
Zfish     1 MFHCIPLWR-CNRHIEAIDRRHCSLLFVPDEIYRYRGSLEELLLDANQLRDLPKPFFNLTKLRKL 64

  Fly    66 GLSDNEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPKLPSGFSQLKN 130
            |||||||.|||.||.||..|||||:|||||.::|:.|.:.::|||||||.||:.:||..|.:|:|
Zfish    65 GLSDNEIQRLPGDIANFNQLVELDISRNDIMELPESISYCKTLQVADFSGNPLTRLPESFPELRN 129

  Fly   131 LTVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPETISQLTKLKRLDLGDNEIEDLPPYLG 195
            |..|.:||:||..||.:.|:|..|.|||||||||.:|||::|||.||:.||:|.||:.:||..:|
Zfish   130 LACLSINDISLQALPDNIGNLCNLVSLELRENLLTYLPESLSQLQKLEELDVGSNELYNLPETIG 194

  Fly   196 YLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVSLTDLDLAQNLLEALP 260
            .|..|.:||||.|||..:|.|:|.:..||.||||||:||.||.|:..|:|||||.::|||::.||
Zfish   195 CLVSLKDLWLDGNQLSDIPAEVGSMRSLTCLDVSENKLERLPEEMGNLLSLTDLLVSQNLIDLLP 259

  Fly   261 DGIAKLSRLTILKLDQNRLQRLNDTLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNAL 325
            :||.||.||:|||.|||||.:|.:::|:||::.||:||||.|..||.|||::.||:|.|.|||.|
Zfish   260 EGIGKLKRLSILKADQNRLVQLPESIGHCESLTELVLTENQLVNLPRSIGKLKKLSNFNCDRNRL 324

  Fly   326 EYLPLEIGQCANLGVLSLRDNKLKKLPPELGNCTVLHVLDVSGNQLLYLPYSLVNLQLKAVWLSE 390
            ..||.|||.|.:|.||.:|:|:|.::||||...:.|||||:|||:|||||.:|.:|:|||:||||
Zfish   325 ASLPKEIGGCCSLNVLCVRENRLMRIPPELSQASELHVLDLSGNRLLYLPLTLTSLRLKALWLSE 389

  Fly   391 NQSQPLLTFQPDTDAETGEQVLSCYLLPQQEYQPITPARD-----------LESD--SEPFEERE 442
            ||||||||||.|.|.|:||:||:|.|||||..:......|           :||.  .:.::::.
Zfish   390 NQSQPLLTFQTDVDPESGEKVLTCVLLPQQPCESENTGSDNLARCGALESLVESSILDDTWDDKA 454

  Fly   443 PSR-TVVKFSEEATQE--KETPFVRQNTPHPKDLKAKAQKLKVERSRNEEHANLVTLPEENGTKL 504
            .:| :.::|.|:...|  :|...:|:.||||.:||                         |..|:
Zfish   455 ANRMSTIRFMEDDDDEDDEERTLLRRATPHPGELK-------------------------NMKKV 494

  Fly   505 AETPTETRTIANNHQQQPHPVQQPIVGVNSKQPVVVGVVTPTTTTV 550
            ||:..:....|.              |::|.:..|...|...||:|
Zfish   495 AESIRKDMNAAK--------------GLDSNKNEVNNAVDRVTTSV 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 160/269 (59%)
leucine-rich repeat 18..38 CDD:275380 12/19 (63%)
LRR_8 37..95 CDD:290566 42/57 (74%)
leucine-rich repeat 39..61 CDD:275380 16/21 (76%)
leucine-rich repeat 62..84 CDD:275380 18/21 (86%)
LRR_8 84..138 CDD:290566 28/53 (53%)
leucine-rich repeat 85..107 CDD:275380 12/21 (57%)
leucine-rich repeat 108..130 CDD:275380 13/21 (62%)
LRR_8 129..187 CDD:290566 33/57 (58%)
leucine-rich repeat 131..153 CDD:275380 10/21 (48%)
leucine-rich repeat 154..176 CDD:275380 16/21 (76%)
leucine-rich repeat 177..199 CDD:275380 10/21 (48%)
LRR_8 198..256 CDD:290566 32/57 (56%)
leucine-rich repeat 200..222 CDD:275380 11/21 (52%)
leucine-rich repeat 223..245 CDD:275380 14/21 (67%)
LRR_8 267..325 CDD:290566 33/57 (58%)
leucine-rich repeat 269..289 CDD:275380 11/19 (58%)
leucine-rich repeat 292..314 CDD:275380 12/21 (57%)
leucine-rich repeat 315..337 CDD:275380 13/21 (62%)
LRR_4 337..375 CDD:289563 21/37 (57%)
leucine-rich repeat 361..382 CDD:275380 14/20 (70%)
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
lrrc1NP_001013463.1 LRR_RI 23..243 CDD:238064 129/219 (59%)
LRR_8 37..94 CDD:290566 42/56 (75%)
leucine-rich repeat 38..60 CDD:275380 16/21 (76%)
leucine-rich repeat 61..83 CDD:275380 18/21 (86%)
leucine-rich repeat 84..106 CDD:275380 12/21 (57%)
leucine-rich repeat 107..129 CDD:275380 13/21 (62%)
leucine-rich repeat 130..152 CDD:275380 10/21 (48%)
LRR_8 152..209 CDD:290566 33/56 (59%)
leucine-rich repeat 153..175 CDD:275380 16/21 (76%)
leucine-rich repeat 176..198 CDD:275380 10/21 (48%)
leucine-rich repeat 199..221 CDD:275380 11/21 (52%)
leucine-rich repeat 222..244 CDD:275380 14/21 (67%)
leucine-rich repeat 268..290 CDD:275380 12/21 (57%)
leucine-rich repeat 291..313 CDD:275380 12/21 (57%)
leucine-rich repeat 337..359 CDD:275380 10/21 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D148064at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102427
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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