DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and X11Lbeta

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_727440.3 Gene:X11Lbeta / 31997 FlyBaseID:FBgn0052677 Length:2139 Species:Drosophila melanogaster


Alignment Length:1830 Identity:325/1830 - (17%)
Similarity:555/1830 - (30%) Gaps:707/1830 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 QVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPETISQ 173
            |:....|||   ...|.:.|.:..:.| :..||...|.|:         |.||.....|.|...:
  Fly   477 QIPTARSNP---CADGLTPLASHYLYG-SKSSLDQHPGDW---------EPREQRKLRLREERER 528

  Fly   174 LTKLKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPN 238
            ..:.:|....:.|.|            |.|.....|||....::.....|::|...:.:.::...
  Fly   529 ERERERERERERERE------------HLLLEQQQQLQLQEVQVARDNHLSHLAGQQQQQQQRKR 581

  Fly   239 EISGLVSLTDLDLAQNLLEALPDGIAKLSRLTILKLDQNRLQRLNDTLGNC---ENMQELILTEN 300
            .:.|.....:.|..:                     |.:|..||.:  ||.   |:.|.|.:|..
  Fly   582 HVYGEERERERDRER---------------------DMDRDHRLVN--GNADPNESWQHLRVTTE 623

  Fly   301 FLSE------LPASIGQMTKLNNLNVDRNA-----------------------------LEY--L 328
            .|:|      .||...| .:::|.|..:|:                             :||  .
  Fly   624 TLAEEGGKHGKPADKAQ-HQMHNTNQSQNSDVNVYREHQLDAWKLERSYTLAVESRHGIIEYEGS 687

  Fly   329 PLEIG--QCANLGVLSL-----------------------------RDNKLKKLPPELGNCTVLH 362
            |..||  ..:|||....                             :...:..:||.....|   
  Fly   688 PRRIGVTTTSNLGATGAAAASAAADESEPPAAAEGAAAATATSQPQQQVPMATVPPLSSTAT--- 749

  Fly   363 VLDVSGNQLLYLPYSLVNLQLKAVWLSENQSQP---------LLTFQPDT----DAETGEQVLSC 414
                          ||.....:|...:..||.|         ||...|:.    .....:|.:..
  Fly   750 --------------SLQKTAARAALAALAQSHPHSSHNILSTLLPHSPNPVNPGQMHAAQQSIQN 800

  Fly   415 YLL----PQQEYQPITPARDLESDSEPFEEREPSRTVVKFSEEATQEKETPFVRQNTPHPKDLKA 475
            |.:    ||:...|  |:||..|.|.|.::::..:.    .::..|.::..|....:.|      
  Fly   801 YPVRPGFPQRIISP--PSRDPRSSSPPLQQQQYQQQ----QQQQLQHQQQHFASLMSSH------ 853

  Fly   476 KAQKLKVERSRNEEHANLVTLPEENGTK-LAETPTETRTIANNHQQQPHPVQQPIVGVNSKQPVV 539
                     |.|..:.|...|..:|..: .:...:|..||::  ...|..|...| |:.:.:...
  Fly   854 ---------SNNNSNTNKQPLSSDNNAEDTSNDVSEIGTISD--LTTPEAVGLSI-GIAAGEMAS 906

  Fly   540 VGVVTPTTTTVAPTGVQG------GSEGASSTAN-------------NVKAATAAVVAELAAT-- 583
            .....|.|....||.|.|      ||...::|.|             :.|::|...:.|.:.|  
  Fly   907 RASTPPQTAQAPPTAVAGSTANGTGSGNGTATGNATAAGSGLGPLSLHTKSSTFDYLYEFSETRK 971

  Fly   584 -----------------VGGSD-------------------------EVQDDDEQEDEFESDRRV 606
                             ..|||                         |.:||:|.:|:.:.:.. 
  Fly   972 VLEEFFKCPSTDEQPIMENGSDVDSIDIQYEFHSNFERDEEDLAEEEEAEDDEEVDDDADEEND- 1035

  Fly   607 GFQVEGEDDDFYKRPPKLHRRDTP---HHLKNKRVQHLTDKQASEILANALASQERNDTTPQHSL 668
              :.|.||:...:...:.:|...|   .|:.::|:.:....|..::.|. |.:|..:.....:| 
  Fly  1036 --EAEDEDEPLEQDRDQNYRAQAPPQSGHIDSERLVYSGYGQQPQLQAQ-LTAQPMSGARRHYS- 1096

  Fly   669 SGKVTSPIEEEEQLEVEQEQQQQQQQHPFDSSLSPISAGKTAEASTDPDNLDGVTELRLEQYEIH 733
                .||:..:                 ||..|...|. .:.|...|.|.|:        ..::.
  Fly  1097 ----GSPLMRD-----------------FDFFLDSTSR-SSGERDADQDGLN--------HNQLL 1131

  Fly   734 IERTAAGLGLSIAGGKGSTPFKG----------DDDGIFISRVTEAGPAD-LAGLKVGDKVIKVN 787
            ...:..|.|:.::||.|..|..|          |.|       :..|..| |:|        ::|
  Fly  1132 STSSGHGGGVGVSGGLGVGPGGGHNYRYSPETTDYD-------SNCGDLDSLSG--------EMN 1181

  Fly   788 GIVVVDADHY-----QAVQVLK------------------------------------------- 804
            |.|.....:|     .|:.||:                                           
  Fly  1182 GGVSTSCSNYAKFYASAMPVLEDGLSSGHTSDTENNNNNQKNLQQSTVNQGGQCPTSLSGSTSIG 1246

  Fly   805 ACGAVLVLVVQREVTRLIGHPVFSEDGSVSQISVETRPLVADA-PPAASISHERYIPAPIEIVPQ 868
            ..|.:.:|:..:.::  ..|.:.|.:...:..|..|     |: .....:.|  ::.|.:...|.
  Fly  1247 GSGGISMLMDMKRIS--TNHSLNSMNNQTTTASTTT-----DSNGGVGGVGH--HLVATLVASPN 1302

  Fly   869 QQHLQQQQQQPIQQVAP----------THS-------------YSGNVFATPTAAQTVQPAVSAA 910
            .:..:.|.|..:|...|          .||             ||..||..|...|...|..:.|
  Fly  1303 NEQAKSQCQTQLQSHPPKTLSLDQSPSNHSKVFKNIDPELDSLYSIGVFHRPDTVQMTPPPPAPA 1367

  Fly   911 P----------------NGLLLNG-----------REAPLSYIQLHTTLIRDQ---------IGQ 939
            |                ||.|..|           :..||: ..:.:||.|..         ||.
  Fly  1368 PHRKPNNNGCSSGVVNTNGSLAGGSNDVDLLQPSSKHTPLA-AAISSTLQRSSPTSTITGNGIGN 1431

  Fly   940 GLG---------FSIAGGKGSPPFKDDCD---------------GIFISRITEGGLAYRDGKIMV 980
            |.|         .|.|.|...||..:..:               .:::||..:||.    ||.::
  Fly  1432 GSGKTRSAGSNCSSSANGGMPPPIPERTNLVSAVQRSPSPGPNSPVWLSRHLDGGA----GKDLL 1492

  Fly   981 GDRVMAINGNDMTEAHHDA---AVACLTEPQRFV---RLVLQREYRGPLEPPTSPRSPAVLNSLS 1039
            .      :|:|....:|.|   .|....|..|.:   ||..|..|.........|||  :|:.:|
  Fly  1493 E------SGSDNHSKNHSADEEDVDTDLETDRLLGHQRLDDQGYYDENKSWDRKPRS--LLSKIS 1549

  Fly  1040 P----------SGY---LANRP-------------------------------------ANFSRS 1054
            |          :||   |::.|                                     .:.|||
  Fly  1550 PKQQIPSTKTRNGYNALLSSTPELPPPIPPKGQSGLGLGLTLGAGNGGKLLDLVGGMVQRSLSRS 1614

  Fly  1055 VVE------VEQPYK------------YNTLATTTPTPKPTVPASIS------------------ 1083
            ..|      .:.|..            .:|:|.|:.|...:.||..|                  
  Fly  1615 SSEHSEKSLSKMPISGGDLCAGGVDVVASTVAATSATVVASTPALGSPGNGGGSERSAAEMANPG 1679

  Fly  1084 -------------NNNNTLPSSKTNGFATAAAATIDSSTG---QPVPAPRRTNSVPMGDG----D 1128
                         |..:.:|....:|..:.|.:...|.||   ..|......|:|..|.|    .
  Fly  1680 GAVKLSEQEIGTINGGSVMPLGSGSGTGSGAGSGAGSGTGTNAAVVANSNANNNVGGGGGGGNNS 1744

  Fly  1129 IGAGSTTSGDSG----------------------------------EAQPS-SLRPLTSDDFQAM 1158
            .|:|:.::.:||                                  |.||: |.|.:.:::..:.
  Fly  1745 SGSGAGSNSNSGEKKVKKSKSKEGGAVLIEGVLFRAKYLGSTQLVCEGQPTKSTRMMQAEEAVSR 1809

  Fly  1159 IPAHFLSGGSQHQV------------------------HVARP----NEVGVSAVTVNVNK--PQ 1193
            |.|....|..|...                        |..|.    .::|...|.:...:  ||
  Fly  1810 IKALAPDGDVQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPQ 1874

  Fly  1194 --PDLPMFPAAPTELGRVTETITKSTFTETV-------------MTRITDNQLAEPL-------- 1235
              .|.|.....|..:..|.|:.......:::             ...|.|::..:.:        
  Fly  1875 DIDDAPKPNRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHRFVKEMDYQEVLNS 1939

  Fly  1236 ---------------ISEEVVLPKNQGS-LGFSIIGGTDHSCVPFGTREPGIFISHIVPGGIASK 1284
                           :.:|||:||.:|. ||..|:..      .:|:..|.:.|::::..|.|::
  Fly  1940 QEIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVES------GWGSMLPTVVIANLMSSGAAAR 1998

  Fly  1285 CGKLRMGDRILKVNE---ADVSKATHQDAVLELLKPGDEIKLTIQHDPLPPGFQEVLLSKAEGE- 1345
            ||:|.:||:::.:|.   ..:..:|.| ..::..|....:|.|:.  |..| ..||.:.:.|.: 
  Fly  1999 CGQLNIGDQLIAINGLSLVGLPLSTCQ-TYIKNTKNQTVVKFTVV--PCAP-VVEVKIKRPETKY 2059

  Fly  1346 RLGMHIKGGLNGQRGNPADPSDEGVFVSKINSVGAARRDGRLKVGMRLLEVNGHSLLGASHQDAV 1410
            :||..::.|:                :..:...|.|.|.| ::||.|::|:|..|::...|:..|
  Fly  2060 QLGFSVQNGV----------------ICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIV 2107

  Fly  1411 NVLRNAGNEI 1420
            |:|..:..||
  Fly  2108 NLLATSVGEI 2117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 31/173 (18%)
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566 7/28 (25%)
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380 6/20 (30%)
LRR_8 129..187 CDD:290566 11/57 (19%)
leucine-rich repeat 131..153 CDD:275380 5/21 (24%)
leucine-rich repeat 154..176 CDD:275380 5/21 (24%)
leucine-rich repeat 177..199 CDD:275380 3/21 (14%)
LRR_8 198..256 CDD:290566 9/57 (16%)
leucine-rich repeat 200..222 CDD:275380 5/21 (24%)
leucine-rich repeat 223..245 CDD:275380 3/21 (14%)
LRR_8 267..325 CDD:290566 18/95 (19%)
leucine-rich repeat 269..289 CDD:275380 5/19 (26%)
leucine-rich repeat 292..314 CDD:275380 8/27 (30%)
leucine-rich repeat 315..337 CDD:275380 8/54 (15%)
LRR_4 337..375 CDD:289563 6/66 (9%)
leucine-rich repeat 361..382 CDD:275380 2/20 (10%)
PDZ 728..816 CDD:214570 22/146 (15%)
PDZ_signaling 931..1016 CDD:238492 27/123 (22%)
PDZ 1239..1329 CDD:214570 25/93 (27%)
PDZ_signaling 1336..1425 CDD:238492 22/86 (26%)
X11LbetaNP_727440.3 PTB_X11 1770..1924 CDD:269919 21/153 (14%)
PDZ_signaling 1957..2042 CDD:238492 25/91 (27%)
PDZ_signaling 2047..2120 CDD:238492 22/88 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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