DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrib and CG3040

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_572372.1 Gene:CG3040 / 31642 FlyBaseID:FBgn0029925 Length:238 Species:Drosophila melanogaster


Alignment Length:203 Identity:67/203 - (33%)
Similarity:108/203 - (53%) Gaps:7/203 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 QLKNLTVLGLNDMSLTTL---PADFGSLTQ-LESLELRENLLKHLPETISQLTKLKRLDLGDNEI 187
            ||:.....|:..:||..|   |....:... |::|:|.||..:.:|:.:.:||.||.|:|..|.:
  Fly     9 QLETAQKTGILKISLQRLQEFPLQLRAYPNVLKTLDLSENRFERVPDELGKLTLLKHLNLSGNRL 73

  Fly   188 EDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVSLTDLDLA 252
            .:|...:|.|..|..|.|..|.|.|||..|...|.|..:::|.|:|:|.|:.:.||..|..|||:
  Fly    74 VELNEVVGELAKLEVLLLMDNMLTRLPKTLANCTHLKTVNLSNNQLKEFPSMLCGLKQLDVLDLS 138

  Fly   253 QNLLEALPDGIAKLSRLTILKLDQNRLQRLNDTLGNCENMQELILTENFL--SELPASIGQMTKL 315
            :|.:..:|..:..|. :|.|.|:||::..|.:.:.:|..::.|.|.||.|  :.....|.:.:|:
  Fly   139 RNKITDVPADVGGLF-VTELNLNQNQISSLAEEVADCPKLKTLRLEENCLQAAAFTPKILKDSKI 202

  Fly   316 NNLNVDRN 323
            .||.||.|
  Fly   203 CNLAVDGN 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 53/159 (33%)
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566 3/10 (30%)
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380 2/2 (100%)
LRR_8 129..187 CDD:290566 18/61 (30%)
leucine-rich repeat 131..153 CDD:275380 5/24 (21%)
leucine-rich repeat 154..176 CDD:275380 7/21 (33%)
leucine-rich repeat 177..199 CDD:275380 8/21 (38%)
LRR_8 198..256 CDD:290566 23/57 (40%)
leucine-rich repeat 200..222 CDD:275380 9/21 (43%)
leucine-rich repeat 223..245 CDD:275380 8/21 (38%)
LRR_8 267..325 CDD:290566 19/59 (32%)
leucine-rich repeat 269..289 CDD:275380 6/19 (32%)
leucine-rich repeat 292..314 CDD:275380 6/23 (26%)
leucine-rich repeat 315..337 CDD:275380 5/9 (56%)
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
CG3040NP_572372.1 LRR_RI 4..192 CDD:238064 60/183 (33%)
leucine-rich repeat 18..39 CDD:275380 4/20 (20%)
LRR_8 40..96 CDD:290566 20/55 (36%)
leucine-rich repeat 40..62 CDD:275380 7/21 (33%)
leucine-rich repeat 63..85 CDD:275380 8/21 (38%)
LRR_8 85..142 CDD:290566 23/56 (41%)
leucine-rich repeat 86..108 CDD:275380 9/21 (43%)
leucine-rich repeat 109..131 CDD:275380 8/21 (38%)
LRR_8 130..185 CDD:290566 16/55 (29%)
leucine-rich repeat 132..151 CDD:275380 6/18 (33%)
leucine-rich repeat 154..176 CDD:275380 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.