DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and Shoc2

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_001013173.1 Gene:Shoc2 / 309548 RGDID:1308146 Length:582 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380
LRR_8 129..187 CDD:290566
leucine-rich repeat 131..153 CDD:275380
leucine-rich repeat 154..176 CDD:275380
leucine-rich repeat 177..199 CDD:275380
LRR_8 198..256 CDD:290566
leucine-rich repeat 200..222 CDD:275380
leucine-rich repeat 223..245 CDD:275380
LRR_8 267..325 CDD:290566
leucine-rich repeat 269..289 CDD:275380
leucine-rich repeat 292..314 CDD:275380
leucine-rich repeat 315..337 CDD:275380
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
Shoc2NP_001013173.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..90
LRR 1 101..122
leucine-rich repeat 104..124 CDD:275380
PLN00113 <115..>483 CDD:215061
LRR 2 124..145
leucine-rich repeat 125..147 CDD:275380
LRR 3 147..169
leucine-rich repeat 148..170 CDD:275380
LRR 4 170..191
leucine-rich repeat 171..193 CDD:275380
LRR 5 193..215
leucine-rich repeat 194..216 CDD:275380
LRR 6 216..237
leucine-rich repeat 217..239 CDD:275380
LRR 7 239..260
leucine-rich repeat 240..262 CDD:275380
LRR 8 262..283
leucine-rich repeat 263..285 CDD:275380
LRR 9 285..307
leucine-rich repeat 286..332 CDD:275380
LRR 10 308..329
LRR 11 332..353
leucine-rich repeat 333..380 CDD:275380
LRR 12 356..377
LRR 13 380..400
leucine-rich repeat 381..403 CDD:275380
LRR 14 403..424
leucine-rich repeat 404..426 CDD:275380
LRR 15 426..448
leucine-rich repeat 427..449 CDD:275380
LRR 16 449..470
leucine-rich repeat 450..472 CDD:275380
PLN03150 <453..527 CDD:178695
LRR 17 472..494
leucine-rich repeat 473..495 CDD:275380
LRR 18 495..516
leucine-rich repeat 496..519 CDD:275380
LRR 19 518..540
LRR 20 542..563
leucine-rich repeat 543..563 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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