DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrib and Stk11ip

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:XP_038939297.1 Gene:Stk11ip / 301535 RGDID:1305046 Length:1138 Species:Rattus norvegicus


Alignment Length:897 Identity:180/897 - (20%)
Similarity:278/897 - (30%) Gaps:342/897 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 PIPKLPSGFSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPETISQLTKLKRLD 181
            ||...|  |..|:.|.:.|:...||..|.   |..:|||:|....::         |..:.:||:
  Rat   101 PIKIFP--FKSLRQLELRGVPIHSLCGLR---GIYSQLETLVCNRSI---------QALEGQRLE 151

  Fly   182 LGDNEIEDLPPYLGYLPGLHEL-------------WL-------DHNQLQRLPPELGLLTKLTYL 226
            |...           |.||.||             ||       .:|.|..|...|.||:.|.:|
  Rat   152 LSSE-----------LRGLQELLSACGGDLCSALPWLALLSADFSYNALSNLDSSLRLLSALRFL 205

  Fly   227 DVSENRLEELPNEISGLVSLTDLDLAQNLLEALPDGIAKLSRLTILKLDQNRLQRLNDTLGNCEN 291
            ::|.|.::    :..|.:..|                   :||.||           |.||.   
  Rat   206 NLSHNHIQ----DCKGFLMHT-------------------TRLGIL-----------DDLGQ--- 233

  Fly   292 MQELILTENFLSELPASI--GQMTKLNNLNVDRNALEYLPLEIGQCANLGVLSLRDNKLKKLPPE 354
                      :|:||||.  ..:::|.:|::..|.|..:|......|.||.|.||.|:|:.|.  
  Rat   234 ----------VSQLPASFTCKDLSELYHLDISYNHLRLVPRMGPSGAALGTLILRANELRSLQ-- 286

  Fly   355 LGNCT---VLHVLDVSG--------NQL-----LYLPYSLV--NLQLKAVWLSEN------QSQP 395
             ||.|   :.|.:...|        .||     |.:.|:|:  :.:|..:||...      :..|
  Rat   287 -GNTTPHPLTHNMPPQGLLSSAVGLEQLKNLRHLDVAYNLLEGHTELAPLWLLAELRKLYLEGNP 350

  Fly   396 LLTFQPDTDAETGEQVLSCYLLPQQEYQ--------PITPARDLESDSE---------PFEEREP 443
             |.|.|...|.|.:     ||.|:....        .:...:||:..||         |......
  Rat   351 -LWFHPAHRATTAQ-----YLSPRARDAAHGFLLDGKVLSLKDLQQTSESSRLGPMTQPLSWPVG 409

  Fly   444 SRTVVKFSEEATQEKETPFVRQNTPHPKDLKAKAQKLKVERSRNEEHANLVTLPEENGTKLAETP 508
            |.|......|.:....:..:....|    |:....:::|.|:...|.              ::|.
  Rat   410 STTETSGGPELSDSLSSGGIVAQAP----LRKVKSRVRVRRASISEP--------------SDTD 456

  Fly   509 TETRTIANNHQQQPHP----VQQ-------------------------PIVGVNSKQPVVVGVVT 544
            .|.||:      .|.|    |||                         ..:|    .|.:..:.|
  Rat   457 PELRTL------DPSPAGWFVQQHRELELLASFRERFGCDWLQYRSHLETMG----SPPLATIKT 511

  Fly   545 PTTTTVAPTGVQGGSEGASSTA--NNVKAATAAVVAELAATVGGSDEVQDDDEQEDEFESDRRVG 607
            |...| .|...|......|..|  .:.|.:...|..|      |.:|::..:|:.:|.|.:    
  Rat   512 PALGT-PPLDAQSLETARSPPAIGEDTKESPEKVSEE------GREELEPHEEEREEQERE---- 565

  Fly   608 FQVEGEDDDFYKRPPKLHRRDTPHHLKNKRVQ-------------------------HLTDKQAS 647
               ||..:|..:...:          :.|.|:                         .:|.....
  Rat   566 ---EGSREDLGEEEEQ----------EQKAVEAELCRPMLVCPLQGTEGVQGRECFLRVTSAHLF 617

  Fly   648 EILANALASQERNDTTPQHSLSGKVTSPIEEEEQLEVEQEQQQQQQQHPFDSSLSPISAGKT--- 709
            |:...|..:.||                :|.:..:..|.:.:.:.|:.|......|.|....   
  Rat   618 EVGLQAAQTLER----------------LELQSLVSAELQSETESQREPGSEGSGPPSGAPVLVL 666

  Fly   710 ------------AEASTDPDNLDGVTELRLEQYEIHIERTAAGLGLSIAGGKGSTPFKGDDDGIF 762
                        ..|..:|:..:.:.||                 |::.     |||....|   
  Rat   667 RFSYICPDRQLRCYAVLEPEAHEAIQEL-----------------LAVL-----TPFTSVKD--- 706

  Fly   763 ISRVTEA----GP--------------ADLAGLKVGD--KVIKVNGIVVVDADHYQAVQVLKACG 807
             .:..||    ||              ....||:..|  |.:..|         .::..|...||
  Rat   707 -QQPGEAKDPQGPRFQCLRCSCEFKPQEPRLGLESDDGWKPLFQN---------TESPVVCPNCG 761

  Fly   808 A--VLVLVVQREV-TRLIGHPVFSEDGSVSQISVETRPLVADA-PPAASISH 855
            :  |::|.|..|| .|.......|.|.:.........|.|.|. ||.|||||
  Rat   762 SDHVVLLAVSGEVPNRERNQEEQSSDSACDLADHSGCPSVPDGIPPQASISH 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 42/185 (23%)
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566 7/20 (35%)
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380 5/12 (42%)
LRR_8 129..187 CDD:290566 14/57 (25%)
leucine-rich repeat 131..153 CDD:275380 6/21 (29%)
leucine-rich repeat 154..176 CDD:275380 4/21 (19%)
leucine-rich repeat 177..199 CDD:275380 4/21 (19%)
LRR_8 198..256 CDD:290566 18/77 (23%)
leucine-rich repeat 200..222 CDD:275380 11/41 (27%)
leucine-rich repeat 223..245 CDD:275380 5/21 (24%)
LRR_8 267..325 CDD:290566 15/59 (25%)
leucine-rich repeat 269..289 CDD:275380 6/19 (32%)
leucine-rich repeat 292..314 CDD:275380 5/23 (22%)
leucine-rich repeat 315..337 CDD:275380 5/21 (24%)
LRR_4 337..375 CDD:289563 16/53 (30%)
leucine-rich repeat 361..382 CDD:275380 7/35 (20%)
PDZ 728..816 CDD:214570 20/109 (18%)
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
Stk11ipXP_038939297.1 LIP1 8..92 CDD:406355
LRR <101..>361 CDD:227223 82/335 (24%)
leucine-rich repeat 179..201 CDD:275380 6/21 (29%)
leucine-rich repeat 202..224 CDD:275380 6/44 (14%)
leucine-rich repeat 225..248 CDD:275380 11/46 (24%)
leucine-rich repeat 249..271 CDD:275380 5/21 (24%)
leucine-rich repeat 272..315 CDD:275380 15/45 (33%)
leucine-rich repeat 316..340 CDD:275380 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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