DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and Lgr4

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_775450.2 Gene:Lgr4 / 286994 RGDID:628615 Length:951 Species:Rattus norvegicus


Alignment Length:406 Identity:105/406 - (25%)
Similarity:174/406 - (42%) Gaps:67/406 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 RQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKNFFR-LHRLRKLGLSDNEIGRLP 76
            ::::.:..::..|..||.|.:.....|:.|.||||||..:|::.|. |.:||.|.|.||.:..:|
  Rat   105 KELKVLTLQNNQLRTVPSEAIHGLSALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNSLTEVP 169

  Fly    77 -PDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMS 140
             ..:.|...|..|.::.|:|..|||                      ..|:.|.:|.||.|::..
  Rat   170 VRPLSNLPTLQALTLALNNISSIPD----------------------FAFTNLSSLVVLHLHNNK 212

  Fly   141 LTTLPAD-FGSLTQLESLELRENLLKHLPETISQLTKLKRLDLGDNEIEDLPP-YLGYLPGLHEL 203
            :.:|... |..|..||:|:|..|.|...|:.|..|..||.|....|.|..:|. ..|..|.|..:
  Rat   213 IKSLSQHCFDGLDNLETLDLNYNNLDEFPQAIKALPSLKELGFHSNSISVIPDGAFGGNPLLRTI 277

  Fly   204 WLDHNQLQRLPPELGLLTKLTYLDVSE---------NRLEELPNEISGLVSLTDLDLAQNLLEAL 259
            .|..|       .|..:....:.::|:         :.::..|| ::|.|.|..|.|....:.::
  Rat   278 HLYDN-------PLSFVGNSAFHNLSDLHSLVIRGASLVQWFPN-LTGTVHLESLTLTGTKISSI 334

  Fly   260 PDGIAKLSR-LTILKLDQNRLQRLNDTLGNCENMQELILTENFLSELPASIGQ-MTKLNNLNVDR 322
            ||.:.:..: |..|.|..|.::.| .:...|..::|:.|..|.:|.:..:..| :|.|..|::.|
  Rat   335 PDDLCQNQKMLRTLDLSYNNIRDL-PSFNGCRALEEISLQRNQISLIKENTFQGLTSLRILDLSR 398

  Fly   323 NALEYLPLEIGQCANLGVLSLRD---NKLKKLPPE----------LGNCTVLHVL---DVSGNQL 371
            |.:.  .:..|..|.||.::..|   |:|...|.|          :||..:...|   |.:..:.
  Rat   399 NLIR--EIHSGAFAKLGTITNLDVSFNELTSFPTEGLNGLNQLKLVGNFKLKDALAARDFANLRS 461

  Fly   372 LYLPYSLVNLQLKAVW 387
            |.:||:   .|..|.|
  Rat   462 LSVPYA---YQCCAFW 474

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 74/283 (26%)
leucine-rich repeat 18..38 CDD:275380 4/19 (21%)
LRR_8 37..95 CDD:290566 22/59 (37%)
leucine-rich repeat 39..61 CDD:275380 11/22 (50%)
leucine-rich repeat 62..84 CDD:275380 8/22 (36%)
LRR_8 84..138 CDD:290566 13/53 (25%)
leucine-rich repeat 85..107 CDD:275380 7/21 (33%)
leucine-rich repeat 108..130 CDD:275380 2/21 (10%)
LRR_8 129..187 CDD:290566 20/58 (34%)
leucine-rich repeat 131..153 CDD:275380 7/22 (32%)
leucine-rich repeat 154..176 CDD:275380 9/21 (43%)
leucine-rich repeat 177..199 CDD:275380 7/22 (32%)
LRR_8 198..256 CDD:290566 13/66 (20%)
leucine-rich repeat 200..222 CDD:275380 4/21 (19%)
leucine-rich repeat 223..245 CDD:275380 4/30 (13%)
LRR_8 267..325 CDD:290566 16/59 (27%)
leucine-rich repeat 269..289 CDD:275380 5/19 (26%)
leucine-rich repeat 292..314 CDD:275380 5/22 (23%)
leucine-rich repeat 315..337 CDD:275380 5/21 (24%)
LRR_4 337..375 CDD:289563 12/53 (23%)
leucine-rich repeat 361..382 CDD:275380 5/23 (22%)
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
Lgr4NP_775450.2 LRRNT 29..61 CDD:214470
LRR 1 58..79
leucine-rich repeat 59..82 CDD:275380
LRR <62..301 CDD:227223 61/224 (27%)
LRR 2 82..103