DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrib and let-413

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_001362181.1 Gene:let-413 / 179171 WormBaseID:WBGene00002632 Length:706 Species:Caenorhabditis elegans


Alignment Length:854 Identity:264/854 - (30%)
Similarity:400/854 - (46%) Gaps:191/854 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FKCIPIFKGCNRQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKNFFRLHRLRKLG 66
            |.|:|:  .|.|||:.:|:...:|..:|.:|.|: |.||:|.|..|:|::|....|.|..||.|.
 Worm     4 FFCLPM--ACQRQVDSIDRSQSNLQAIPSDIFRF-RKLEDLNLTMNNIKELDHRLFSLRHLRILD 65

  Fly    67 LSDNEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPKLPSGFSQLKNL 131
            :||||:..||.:|.|...|:||:::||.|..:||.:::.:.|...:.||||..:||....:..::
 Worm    66 VSDNELAVLPAEIGNLTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSI 130

  Fly   132 TVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPETISQLTKLKRLDLGDNEIEDLPPYLGY 196
            |:|.||:.|||.||::.||||.|..||.|:|||:.:|.:|.:|.||:.||||.||:|.||..:|.
 Worm   131 TILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGK 195

  Fly   197 LPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVSLTDLDLAQNLLEALPD 261
            |..|.|.::|.|.|..||..:.....|..||||||::..||..:..:.:||||:::.|.:..||.
 Worm   196 LTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELPS 260

  Fly   262 GIAKLSRLTILKLDQNRLQRLNDTLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALE 326
            ...:|.||.:||.|:|.|..|...:|.|:::.||.|.:|||::||.:||.:.:|..||||.|.|.
 Worm   261 SFGELKRLQMLKADRNSLHNLTSEIGKCQSLTELYLGQNFLTDLPDTIGDLRQLTTLNVDCNNLS 325

  Fly   327 YLPLEIGQCANLGVLSLRDNKLKKLPPELGNCTVLHVLDVSGNQLLYLPYSL-VNLQLKAVWLSE 390
            .:|..||.|.:|.|||||.|.|.:||..:|.|..|.||||:.|:|.:||::: |..:|:|:||||
 Worm   326 DIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVASNKLPHLPFTVKVLYKLQALWLSE 390

  Fly   391 NQSQPLLTFQPDTDAETGEQVLSCYLLPQQEYQPITPARDLESDSEPFEEREPSRTV-----VKF 450
            ||:|.:|......|...|.:|::||||||.:      |.|.|..|...:........     |.|
 Worm   391 NQTQSILKLSETRDDRKGIKVVTCYLLPQVD------AIDGEGRSGSAQHNTDRGAFLGGPKVHF 449

  Fly   451 SEEA----TQEKETP-----FVRQNTPHPKDLKAKAQKLKVERSRNEEHANLVTLPEENGTKLAE 506
            .::|    .:.||..     |.|.||||||                                   
 Worm   450 HDQADTTFEENKEAEIHLGNFERHNTPHPK----------------------------------- 479

  Fly   507 TPTETRTIANNHQQQPHPVQQPIVGVNSKQPVVVGVVTPTTTTVAPTGVQGGSEGASSTANNVKA 571
            ||...:...:.| ..||.:.||      :|   :.:|:...|:.:       |.|.||.:.|   
 Worm   480 TPKHKKGSIDGH-MLPHEIDQP------RQ---LSLVSNHRTSTS-------SFGESSNSIN--- 524

  Fly   572 ATAAVVAELAATVGGSDEVQDDDEQEDEFESDRRVGFQVEGEDDDFYKRPPKLHRRDTPHHLKNK 636
                                                                   ||        
 Worm   525 -------------------------------------------------------RD-------- 526

  Fly   637 RVQHLTDKQASEILANALASQERNDTTPQHSLSGKVTSPIEEEEQLEVEQEQQQQQQQHPFDSSL 701
                |.|.:..:..|:|           |:.:.....|| |.||::....            |||
 Worm   527 ----LADIRFIDAPASA-----------QNGVREATLSP-EREERMATSL------------SSL 563

  Fly   702 SPISAGKTAEASTDPDNLDGVTELRLEQYEIHIERTAAG-LGLSIAGGKGS--TPFKGDDDGIFI 763
            |.::||..                  ..:.|.|::...| ||||.|||..:  .|....|.|:|:
 Worm   564 SNLAAGTQ------------------NMHTIRIQKDDTGKLGLSFAGGTSNDPAPNSNGDSGLFV 610

  Fly   764 SRVTEAGPADLAGLKVGDKVIKVNGIVVVDADHYQAVQVLKACGAVLVLVVQREVTRLIGHPVFS 828
            ::||....|...||:.|||:|:.|.:.:::|....|::.:|....|.::|::|..:.:......|
 Worm   611 TKVTPGSAAYRCGLREGDKLIRANDVNMINASQDNAMEAIKKRETVELVVLRRSPSPVSRTSEPS 675

  Fly   829 EDGSVSQIS 837
            .:||..|::
 Worm   676 LNGSSHQLN 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 111/269 (41%)
leucine-rich repeat 18..38 CDD:275380 5/19 (26%)
LRR_8 37..95 CDD:290566 26/57 (46%)
leucine-rich repeat 39..61 CDD:275380 9/21 (43%)
leucine-rich repeat 62..84 CDD:275380 11/21 (52%)
LRR_8 84..138 CDD:290566 18/53 (34%)
leucine-rich repeat 85..107 CDD:275380 8/21 (38%)
leucine-rich repeat 108..130 CDD:275380 7/21 (33%)
LRR_8 129..187 CDD:290566 30/57 (53%)
leucine-rich repeat 131..153 CDD:275380 12/21 (57%)
leucine-rich repeat 154..176 CDD:275380 10/21 (48%)
leucine-rich repeat 177..199 CDD:275380 12/21 (57%)
LRR_8 198..256 CDD:290566 21/57 (37%)
leucine-rich repeat 200..222 CDD:275380 7/21 (33%)
leucine-rich repeat 223..245 CDD:275380 9/21 (43%)
LRR_8 267..325 CDD:290566 26/57 (46%)
leucine-rich repeat 269..289 CDD:275380 8/19 (42%)
leucine-rich repeat 292..314 CDD:275380 10/21 (48%)
leucine-rich repeat 315..337 CDD:275380 11/21 (52%)
LRR_4 337..375 CDD:289563 19/37 (51%)
leucine-rich repeat 361..382 CDD:275380 10/21 (48%)
PDZ 728..816 CDD:214570 29/90 (32%)
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
let-413NP_001362181.1 PLN00113 14..>370 CDD:215061 152/356 (43%)
leucine-rich repeat 38..60 CDD:275380 9/21 (43%)
leucine-rich repeat 61..83 CDD:275380 11/21 (52%)
leucine-rich repeat 84..106 CDD:275380 8/21 (38%)
leucine-rich repeat 107..129 CDD:275380 7/21 (33%)
leucine-rich repeat 130..152 CDD:275380 12/21 (57%)
leucine-rich repeat 153..175 CDD:275380 10/21 (48%)
leucine-rich repeat 176..198 CDD:275380 12/21 (57%)
leucine-rich repeat 199..221 CDD:275380 7/21 (33%)
leucine-rich repeat 222..244 CDD:275380 9/21 (43%)
leucine-rich repeat 245..265 CDD:275380 7/19 (37%)
leucine-rich repeat 268..290 CDD:275380 9/21 (43%)
leucine-rich repeat 291..313 CDD:275380 10/21 (48%)
leucine-rich repeat 314..336 CDD:275380 11/21 (52%)
leucine-rich repeat 360..382 CDD:275380 10/21 (48%)
PDZ_signaling 574..661 CDD:238492 28/86 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 399 1.000 Inparanoid score I1100
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto20154
orthoMCL 1 0.900 - - OOG6_102427
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2604
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.890

Return to query results.
Submit another query.