DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrib and lron-15

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_495322.3 Gene:lron-15 / 174079 WormBaseID:WBGene00016974 Length:1275 Species:Caenorhabditis elegans


Alignment Length:646 Identity:151/646 - (23%)
Similarity:256/646 - (39%) Gaps:180/646 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDL-PKNFFRLHRLRKLGLSDNEIGRLPP- 77
            ::|:..|:..|.|:|...|...:||:.:.|:.|:|..| ..|........|:.|.:|::.||.. 
 Worm   240 LKFLVLRNNLLTQIPYVALNDLKTLQSIDLEGNNITHLMDTNEVTFESEMKVILRNNKVRRLDKH 304

  Fly    78 DIQNFENLVELDVSRNDIPDIPDD----IKHLQSLQVADFSSNPIPKLPSG-------------- 124
            ..::|..:.|||:|.|.|..:.|.    :.|:|||   |.|.|.|..||.|              
 Worm   305 SFRSFRKIRELDISYNQIQTVEDSSFETVGHMQSL---DLSYNRIAYLPRGMLKNFAKTLKTLKL 366

  Fly   125 -----------FSQLKNLTVLGLNDMSLTTLPAD--------------------------FGSLT 152
                       ...|:|||.|.||...|..:..|                          ...:.
 Worm   367 AENMIHATPEALRDLRNLTHLNLNGNKLNRIDGDVLKGCTDTLVELFIANNYLEHIPHGVLSGMK 431

  Fly   153 QLESLELRENLLKHL--PETISQLTK-----LKRLDLGDNEIEDLPPYLGY-------------- 196
            |||.|::.:|.:..|  |.::..:||     ::||:|..|.|.::..||.:              
 Worm   432 QLEHLDISKNKIMSLKKPTSLLSITKEETSTVRRLNLAGNRINNMSDYLIFEHMPLLTYVDVSFN 496

  Fly   197 ------------LPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPN-EISGLVSLTD 248
                        |..|..|:|.:|||... |.|..|.||.:|.:..|:::::.| .::.|..|..
 Worm   497 RIRFISPRVFEKLKNLESLFLQNNQLAHF-PSLFRLDKLRHLMLDNNQIQKIDNFSLADLPKLQH 560

  Fly   249 LDLAQNLLEALPD---GIAKLSRLTILKLDQNRLQRLND-TLGNCENMQELILTEN--------- 300
            |.||.|.|:.:.:   |.:..|.|..|.|..|::..::. :..:.:|:|:|.|:.|         
 Worm   561 LSLAGNQLDIITENMFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITSMT 625

  Fly   301 ----------------FLSELPASIGQMTKLNNLNVDRNALEYLPLEIGQCA-----NLGVLSLR 344
                            .:..||:::.|:..|:.|::|.|.|.    ||.:.|     :|..|.|.
 Worm   626 FSNLRNLRYLDLSHNRIIKILPSALYQLPALDVLHLDHNNLN----EIDRDAFRSFSDLQSLKLS 686

  Fly   345 DNKLKKLPPE-LGNCTVLHVLDVSGNQLLYLPYSLVNLQLKAVWLSENQSQPLLTFQPDTDAETG 408
            .|..::...| ||:.:.:|.||:|.||:..:....:...::.:.|:.|               :.
 Worm   687 HNAFRRFSCEFLGSISQVHQLDLSSNQINEIDIFCIARGIRKLSLASN---------------SV 736

  Fly   409 EQVLSCYLLPQQEYQPITPARD--LESDSEPF-EEREPSRTVVKFSEEATQE--KETPFVRQNTP 468
            |::....|....|...|..:.:  ::.||:.| |.|:.|.  :|.|....:.  |.| |..|.:.
 Worm   737 EKINRKLLQDATELTSIDISHNGIIDVDSDAFCECRKLSH--IKLSHNYIRNLWKGT-FQYQESL 798

  Fly   469 HPKDLKAKAQKLKVERSRNE---------EHANLVTLPEENGTKLAETPTE--TRTIANNH 518
            |..|:           |.|:         ...|::.| ..|..||:..|.|  :.|:|:.|
 Worm   799 HTLDI-----------SFNDILFLHQGTFGKNNILQL-HVNNNKLSRIPLEALSSTMASLH 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 90/361 (25%)
leucine-rich repeat 18..38 CDD:275380 5/19 (26%)
LRR_8 37..95 CDD:290566 18/59 (31%)
leucine-rich repeat 39..61 CDD:275380 6/22 (27%)
leucine-rich repeat 62..84 CDD:275380 6/22 (27%)
LRR_8 84..138 CDD:290566 24/82 (29%)
leucine-rich repeat 85..107 CDD:275380 8/25 (32%)
leucine-rich repeat 108..130 CDD:275380 9/46 (20%)
LRR_8 129..187 CDD:290566 21/90 (23%)
leucine-rich repeat 131..153 CDD:275380 7/47 (15%)
leucine-rich repeat 154..176 CDD:275380 6/23 (26%)
leucine-rich repeat 177..199 CDD:275380 8/47 (17%)
LRR_8 198..256 CDD:290566 20/58 (34%)
leucine-rich repeat 200..222 CDD:275380 9/21 (43%)
leucine-rich repeat 223..245 CDD:275380 5/22 (23%)
LRR_8 267..325 CDD:290566 17/83 (20%)
leucine-rich repeat 269..289 CDD:275380 4/20 (20%)
leucine-rich repeat 292..314 CDD:275380 7/46 (15%)
leucine-rich repeat 315..337 CDD:275380 8/26 (31%)
LRR_4 337..375 CDD:289563 13/38 (34%)
leucine-rich repeat 361..382 CDD:275380 6/20 (30%)
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
lron-15NP_495322.3 LRR_8 95..155 CDD:290566
leucine-rich repeat 120..144 CDD:275380
LRR_RI <144..348 CDD:238064 34/110 (31%)
LRR_8 144..205 CDD:290566
leucine-rich repeat 145..168 CDD:275380
leucine-rich repeat 169..194 CDD:275380
leucine-rich repeat 195..217 CDD:275380
LRR_8 217..274 CDD:290566 10/33 (30%)
leucine-rich repeat 218..239 CDD:275380
leucine-rich repeat 240..263 CDD:275380 6/22 (27%)
leucine-rich repeat 264..311 CDD:275380 12/46 (26%)
LRR_8 289..346 CDD:290566 20/59 (34%)
leucine-rich repeat 312..335 CDD:275380 7/22 (32%)
leucine-rich repeat 336..356 CDD:275380 10/22 (45%)
LRR_RI <338..498 CDD:238064 34/162 (21%)
leucine-rich repeat 361..383 CDD:275380 1/21 (5%)
leucine-rich repeat 384..405 CDD:275380 7/20 (35%)
LRR_8 408..473 CDD:290566 13/64 (20%)
leucine-rich repeat 409..432 CDD:275380 0/22 (0%)
leucine-rich repeat 433..462 CDD:275380 8/28 (29%)
LRR_8 461..522 CDD:290566 12/60 (20%)
leucine-rich repeat 463..487 CDD:275380 7/23 (30%)
leucine-rich repeat 488..511 CDD:275380 1/22 (5%)
LRR_8 510..568 CDD:290566 20/58 (34%)
LRR_4 510..551 CDD:289563 14/41 (34%)
leucine-rich repeat 512..533 CDD:275380 9/21 (43%)
LRR_4 533..573 CDD:289563 12/39 (31%)
leucine-rich repeat 534..557 CDD:275380 5/22 (23%)
leucine-rich repeat 558..581 CDD:275380 7/22 (32%)
LRR_8 583..642 CDD:290566 9/58 (16%)
leucine-rich repeat 584..607 CDD:275380 4/22 (18%)
LRR_RI <607..799 CDD:238064 47/213 (22%)
leucine-rich repeat 608..631 CDD:275380 4/22 (18%)
LRR_8 630..688 CDD:290566 14/61 (23%)
leucine-rich repeat 632..655 CDD:275380 3/22 (14%)
leucine-rich repeat 656..676 CDD:275380 8/23 (35%)
leucine-rich repeat 680..703 CDD:275380 7/22 (32%)
leucine-rich repeat 704..749 CDD:275380 10/59 (17%)
leucine-rich repeat 726..739 CDD:275378 3/27 (11%)
LRR_8 748..808 CDD:290566 18/73 (25%)
leucine-rich repeat 750..771 CDD:275380 4/20 (20%)
leucine-rich repeat 774..797 CDD:275380 7/25 (28%)
LRR_8 797..856 CDD:290566 14/63 (22%)
LRR_RI <798..982 CDD:238064 14/62 (23%)
leucine-rich repeat 798..845 CDD:275380 12/58 (21%)
LRR_8 845..904 CDD:290566 1/3 (33%)
leucine-rich repeat 846..869 CDD:275380 1/2 (50%)
leucine-rich repeat 870..893 CDD:275380
leucine-rich repeat 894..915 CDD:275380
LRR_8 938..998 CDD:290566
leucine-rich repeat 940..963 CDD:275380
leucine-rich repeat 964..987 CDD:275380
leucine-rich repeat 988..1009 CDD:275380
leucine-rich repeat 1038..1064 CDD:275380
leucine-rich repeat 1113..1139 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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