DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and lrrd1

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:XP_002934640.2 Gene:lrrd1 / 100490254 XenbaseID:XB-GENE-985410 Length:757 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380
LRR_8 129..187 CDD:290566
leucine-rich repeat 131..153 CDD:275380
leucine-rich repeat 154..176 CDD:275380
leucine-rich repeat 177..199 CDD:275380
LRR_8 198..256 CDD:290566
leucine-rich repeat 200..222 CDD:275380
leucine-rich repeat 223..245 CDD:275380
LRR_8 267..325 CDD:290566
leucine-rich repeat 269..289 CDD:275380
leucine-rich repeat 292..314 CDD:275380
leucine-rich repeat 315..337 CDD:275380
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570
PDZ_signaling 1336..1425 CDD:238492
lrrd1XP_002934640.2 PLN00113 41..>611 CDD:215061
leucine-rich repeat 42..63 CDD:275380
leucine-rich repeat 64..86 CDD:275380
leucine-rich repeat 87..109 CDD:275380
leucine-rich repeat 110..132 CDD:275380
leucine-rich repeat 133..155 CDD:275380
leucine-rich repeat 156..178 CDD:275380
leucine-rich repeat 179..201 CDD:275380
leucine-rich repeat 202..224 CDD:275380
leucine-rich repeat 225..247 CDD:275380
leucine-rich repeat 248..270 CDD:275380
leucine-rich repeat 271..316 CDD:275380
leucine-rich repeat 340..385 CDD:275380
leucine-rich repeat 386..408 CDD:275380
leucine-rich repeat 409..431 CDD:275380
leucine-rich repeat 478..500 CDD:275380
leucine-rich repeat 501..520 CDD:275380
leucine-rich repeat 550..572 CDD:275380
leucine-rich repeat 573..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
Death 664..744 CDD:260017
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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