DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and sntg1

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:XP_002666738.3 Gene:sntg1 / 100330925 ZFINID:ZDB-GENE-140106-77 Length:525 Species:Danio rerio


Alignment Length:130 Identity:41/130 - (31%)
Similarity:59/130 - (45%) Gaps:28/130 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1314 LLKPGDE----IKLTIQHDPLPPGFQEVLLSKAE----GER-----------LGMHIKGGLNGQR 1359
            ||:.|.|    |:|.:..|.|....|:|:....|    .||           .|:.||||  .:.
Zfish    16 LLQDGSEEPFNIRLHLAKDILTIQEQDVICVSGEPFYSSERTVTIRRQTIGGFGLSIKGG--AEH 78

  Fly  1360 GNPADPSDEGVFVSKINSVGAARRDGRLKVGMRLLEVNGHSLLGASHQDAVNVLRNAGNEIQLVV 1424
            ..|       |.:|||:....|...|.|.:|..:|::||.::....|::.|.||||||.|:.|.|
Zfish    79 KIP-------VVISKISKEQKAELSGLLFIGDGILQINGINVRSYRHEEVVQVLRNAGEEVTLTV 136

  Fly  1425  1424
            Zfish   137  136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380
LRR_8 129..187 CDD:290566
leucine-rich repeat 131..153 CDD:275380
leucine-rich repeat 154..176 CDD:275380
leucine-rich repeat 177..199 CDD:275380
LRR_8 198..256 CDD:290566
leucine-rich repeat 200..222 CDD:275380
leucine-rich repeat 223..245 CDD:275380
LRR_8 267..325 CDD:290566
leucine-rich repeat 269..289 CDD:275380
leucine-rich repeat 292..314 CDD:275380
leucine-rich repeat 315..337 CDD:275380
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570
PDZ_signaling 931..1016 CDD:238492
PDZ 1239..1329 CDD:214570 6/18 (33%)
PDZ_signaling 1336..1425 CDD:238492 32/104 (31%)
sntg1XP_002666738.3 PDZ_signaling 55..136 CDD:238492 29/89 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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