DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and HDA1

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_014377.1 Gene:HDA1 / 855710 SGDID:S000004966 Length:706 Species:Saccharomyces cerevisiae


Alignment Length:499 Identity:109/499 - (21%)
Similarity:206/499 - (41%) Gaps:111/499 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGL-------------HKKMKIYRPYK- 53
            |.|:.|........|.|...||..|:|:...:.::...||             ...:||  |.: 
Yeast    63 DVRMRYHAKIFTSYFEYIDPHPEDPRRIYRIYKILAENGLINDPTLSGVDDLGDLMLKI--PVRA 125

  Fly    54 ASAQDMLRFHSDEYIAYLQQVTP-------------QNIQCNSVAYTKYLAHFSVGEDCPVFDGL 105
            |:::::|..|:.|::.:::....             .::..|:.:|..  |....|       |.
Yeast   126 ATSEEILEVHTKEHLEFIESTEKMSREELLKETEKGDSVYFNNDSYAS--ARLPCG-------GA 181

  Fly   106 FDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGFCYVNDIVIGILELLKYHP--- 167
            .:.|.    |.:||..|     :.:.:....| |||:...|.|||..:::.:....:||.:|   
Yeast   182 IEACK----AVVEGRVK-----NSLAVVRPPG-HHAEPQAAGGFCLFSNVAVAAKNILKNYPESV 236

  Fly   168 -RVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKY--GNYFFPGT--GDMYEIGAESGRYYSVNV- 226
             |::.:|.|:|||:|.|::||..|:|:..|.|::  |.| :|||  |...:.|...|..::.|: 
Yeast   237 RRIMILDWDIHHGNGTQKSFYQDDQVLYVSLHRFEMGKY-YPGTIQGQYDQTGEGKGEGFNCNIT 300

  Fly   227 -PLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKE 290
             |: .|:.|..|...|:.::..:...::|..:::..|.|:..||.:|...::...:|.....:|.
Yeast   301 WPV-GGVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFDAADGDTIGQCHVTPSCYGHMTHMLKS 364

  Fly   291 LNVPTL-VVGGGGYTLRNVARCWTHETSLLVDQDIENDLP--------------------ATEYY 334
            |....| ||..|||.|..:||.......:|:.:. .::||                    .::|:
Yeast   365 LARGNLCVVLEGGYNLDAIARSALSVAKVLIGEP-PDELPDPLSDPKPEVIEMIDKVIRLQSKYW 428

  Fly   335 DFF--------------------APDFTLHPEINSRQDNANSKQY----LELIVKHVYENLKMCQ 375
            :.|                    :.:|.|...|..:|.:..|.::    |.|:...:.:|..:| 
Yeast   429 NCFRRRHANSGCNFNEPINDSIISKNFPLQKAIRQQQQHYLSDEFNFVTLPLVSMDLPDNTVLC- 492

  Fly   376 HSPSVQMVQTPPDV--DLEELRSNREEASDP-DVRISVADEDKL 416
             :|::....|...|  |..::.:.|...|.. |:..||..::.|
Yeast   493 -TPNISESNTIIIVVHDTSDIWAKRNVISGTIDLSSSVIIDNSL 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 100/465 (22%)
HDA1NP_014377.1 HDAC_Clr3 81..403 CDD:212542 81/345 (23%)
Arb2 457..698 CDD:401634 18/81 (22%)

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