DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and HDA6

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_201116.1 Gene:HDA6 / 836431 AraportID:AT5G63110 Length:471 Species:Arabidopsis thaliana


Alignment Length:432 Identity:232/432 - (53%)
Similarity:308/432 - (71%) Gaps:17/432 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYI 68
            |||||||...:|:::||.||||||.|:.:.|||:::|.||::::|.||..|.|.|:.||||.||:
plant    19 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYV 83

  Fly    69 AYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICIN 133
            .:|..|:|:::...|.|  :.|..|:|||||||||||||||....|.|:..|.|||...:||.||
plant    84 DFLASVSPESMGDPSAA--RNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAIN 146

  Fly   134 WSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFH 198
            |.||||||||.||||||||||||:|||||||...|||||||||||||||:||||.||||||.|||
plant   147 WGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFH 211

  Fly   199 KYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGA 263
            |:|: ||||||.:.::|||.|:||::||||.:|:||:|:..:|:|:|..:|:.|:|.|:||||||
plant   212 KFGD-FFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGA 275

  Fly   264 DSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDL 328
            |||:|||||||:||.|||.:|::|::..|||.:|:||||||:|||||||.:||::.|..:.:|.|
plant   276 DSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL 340

  Fly   329 PATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPP-DVDLE 392
            |..||:::|.||:|||.: .|..:|.|:.:.:|.|...:.|.|....|:||||...||| :..|:
plant   341 PYNEYFEYFGPDYTLHVD-PSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLD 404

  Fly   393 ELRSNREEASDPDVRISVADEDKLVDAKNEFYDGD-QDQDKP 433
            |...:.|....|.:....|.           |:.| .|.|||
plant   405 EPEDDMETRPKPRIWSGTAT-----------YESDSDDDDKP 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 221/384 (58%)
HDA6NP_201116.1 HDAC_classI 24..331 CDD:212517 189/309 (61%)

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