DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and HDA7

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_198410.1 Gene:HDA7 / 833525 AraportID:AT5G35600 Length:409 Species:Arabidopsis thaliana


Alignment Length:406 Identity:195/406 - (48%)
Similarity:266/406 - (65%) Gaps:9/406 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYI 68
            |||||||...:|:::||...|.||||:.|||:|:::|.||:.|:|..|..|.|.|..:|||.|||
plant    10 RRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASDFEKFHSLEYI 74

  Fly    69 AYLQQVTPQNIQCNSVAYTKYLAHFSVGEDC--PVFDGLFDFCAMYTGASLEGAQKLNHNHSDIC 131
            .:|:.|||:.:.....:.::.|..|:|..|.  |||..|||:|..|.|.|:..|.|||...:||.
plant    75 NFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGSISAAAKLNRQEADIA 139

  Fly   132 INWSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTAS 196
            |||:||:||.||.:||||.||||:|:.||||||...|||||:|...|||.|:|||..||||||.|
plant   140 INWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVS 204

  Fly   197 FHKYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQC 261
            |||.|:     |||:.:.|...|:|||:|.|||:|:||.|...:|.|:|...|:.|.|..|||||
plant   205 FHKVGD-----TGDISDYGEGKGQYYSLNAPLKDGLDDFSLRGLFIPVIHRAMEIYEPEVIVLQC 264

  Fly   262 GADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIEN 326
            ||||||||..|.|:||.||||:|:::|:..|||.:::|||||||.||||||.:||::.|.:.::|
plant   265 GADSLAGDPFGTFNLSIKGHGDCLQYVRSFNVPLMILGGGGYTLPNVARCWCYETAIAVGEQLDN 329

  Fly   327 DLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDL 391
            |||..:|..:|.||:.||....:|| |.|::..:..:.:.:...|.:..|:|||....||.....
plant   330 DLPGNDYMKYFRPDYKLHILPTNRQ-NLNTRLDIITMRETLLAQLSLVMHAPSVPFQDTPSSSQA 393

  Fly   392 EELRS-NREEASDPDV 406
            .|... :.|:.:||.:
plant   394 TEAAEVDMEKRNDPRI 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 191/385 (50%)
HDA7NP_198410.1 HDAC_classI 15..322 CDD:212517 164/311 (53%)

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