DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HDAC3 and HDA15

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_850609.2 Gene:HDA15 / 821382 AraportID:AT3G18520 Length:564 Species:Arabidopsis thaliana


Alignment Length:444 Identity:109/444 - (24%)
Similarity:173/444 - (38%) Gaps:110/444 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKA---SAQDMLRFHSDEYI-----------AYLQQ 73
            ||.:|.||....:.:...|:.....:  |..|   :.|::...|:.|::           :|...
plant   171 HPERPDRLRAIAASLATAGVFPGRCL--PINAREITKQELQMVHTSEHVDAVDTTSQLLYSYFTS 233

  Fly    74 VTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCA-----MYTGASLEGAQKLNHNHSDICIN 133
            .|..|      .|:...|..:.|           .||     ::||....|.         ..:.
plant   234 DTYAN------EYSARAARLAAG-----------LCADLATDIFTGRVKNGF---------ALVR 272

  Fly   134 WSGGLHHAKKFEASGFC-YVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASF 197
            ..|  |||....|.||| :.|..|..::.......:||.:|.|||||:|.||.|.....|:..|.
plant   273 PPG--HHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISL 335

  Fly   198 HKY-GNYFFPGTGDMYEIGAESGRYYSVNVPLK-EGIDDQSYFQVFKPIISAIMDFYRPTAIVLQ 260
            |:: |..|:||||...|:|:..|..|.||||.. .|:.|:.|...|:.::..|...:.|..:::.
plant   336 HRHEGGNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIIS 400

  Fly   261 CGADSLAGDRLGCFSLSTKGHGECVKFVKEL-NVPTLVVGGGGYTLRNVARCWTHETSLLVDQDI 324
            .|.|:..||.|||..::..|:....:.:.:| ....||:..|||.||:::...|....:|:.::.
plant   401 AGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENP 465

  Fly   325 ENDLP-ATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPD 388
            ||:|| ||                                             :|||..:||..|
plant   466 ENELPIAT---------------------------------------------TPSVAGLQTVLD 485

  Fly   389 VDLEELRSNREEASDPDVRISVAD-----EDKLVDAKNEFYDGDQDQDKPDSAE 437
            |      .|.:....|.:.||.:.     |.:|::.|:|..|..:.....|..|
plant   486 V------LNIQLEFWPSLAISYSKLLSELEARLIENKSEKSDEKEGCSGSDMVE 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 96/388 (25%)
HDA15NP_850609.2 HDAC_classII 171..461 CDD:212518 84/319 (26%)

Return to query results.
Submit another query.