DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and Hdac8

DIOPT Version :9

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_006528338.1 Gene:Hdac8 / 70315 MGIID:1917565 Length:386 Species:Mus musculus


Alignment Length:363 Identity:146/363 - (40%)
Similarity:227/363 - (62%) Gaps:25/363 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIAYLQQVT-------PQNIQCNSV 84
            |:|.::.|||:..|.|||:|:|.:|..||.::|..||:|.|:.:||:|:       |.:|:    
Mouse    35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIE---- 95

  Fly    85 AYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGF 149
                    :.:|.|||..:|:||:.|...|.::..||.|......:.||||||.|||||.|||||
Mouse    96 --------YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGF 152

  Fly   150 CYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKYGNYFFPGTGDMYEI 214
            ||:||.|:|||.|.:...|:||:|:|:||||||::||..|.:|||.|.||:...||||||||.::
Mouse   153 CYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDV 217

  Fly   215 GAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGADSLAGDRLGCFSLSTK 279
            |...|||||||||:::||.|:.|:.:.:.::..:...:.|.|:|||.|||::|||.:..|:::..
Mouse   218 GLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPV 282

  Fly   280 GHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTL- 343
            |.|:|:|:|.:..:.||::|||||.|.|.|||||:.|.:::.:.:.:::|..|::..:.||:.| 
Mouse   283 GIGKCLKYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLE 347

  Fly   344 -----HPEINSRQDNANSKQYLELIVKHVYENLKMCQH 376
                 .|:.|..........|::.:|.|.......|::
Mouse   348 ITPSCRPDRNEPHRIQQILNYIKAVVPHSSSFSSECEN 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 146/363 (40%)
Hdac8XP_006528338.1 HDAC8 16..370 CDD:212524 143/346 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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