DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HDAC3 and Hdac9

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_008762838.2 Gene:Hdac9 / 687001 RGDID:1310748 Length:1089 Species:Rattus norvegicus


Alignment Length:401 Identity:103/401 - (25%)
Similarity:172/401 - (42%) Gaps:91/401 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYT 87
            ||....|:....|.:...||..|.:..:..|||.:::...|| |:.:.|...:|.:.|       
  Rat   677 HPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHS-EHHSLLYGTSPLDGQ------- 733

  Fly    88 KYLAHFSVGEDCPVF-------------DGLFD------FCAMYTGASLEGAQKLNHNHSDICIN 133
            |......:|:|...|             |.:::      ...|..|..:|.|.|:.         
  Rat   734 KLDPRTLLGDDSRKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVA--------- 789

  Fly   134 WSGGL-----------HHAKKFEASGFCYVNDIVIGILELLKY------HPRVLYIDIDVHHGDG 181
             ||.|           |||::..|.|||:.|.:.|    ..||      ..::|.:|:|||||:|
  Rat   790 -SGELKNGFAVVRPPGHHAEESAAMGFCFFNSVAI----TAKYLRDQLNISKILIVDLDVHHGNG 849

  Fly   182 VQEAFYLTDRVMTASFHKY--GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGID----DQSYFQV 240
            .|:|||....::..|.|:|  || ||||:|...|:|...|..|:||:....|:|    |..|.:.
  Rat   850 TQQAFYADPSILYISLHRYDEGN-FFPGSGAPNEVGVGLGEGYNVNIAWTGGLDPPMGDVEYLEA 913

  Fly   241 FKPIISAIMDFYRPTAIVLQCGADSLAGDR--LGCFSLSTKGHGECVKFVKEL-NVPTLVVGGGG 302
            |:.::..:...:.|..:::..|.|:|.|..  ||.:.::.|..|...|.:..| |....:...||
  Rat   914 FRTVVMPVAREFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLANGRVALALEGG 978

  Fly   303 YTLRNVARCWTHE---TSLLVDQ--DIENDLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLEL 362
            :.|  .|.|...|   .:||.::  .:|.|:              ||..:|:.. .|:.::.:|:
  Rat   979 HDL--TAICDASEACINALLGNEPGSLEEDV--------------LHQSVNTNA-AASLQKTIEI 1026

  Fly   363 IVKHVYENLKM 373
            ..|: ::::||
  Rat  1027 QSKY-WKSIKM 1036

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 103/401 (26%)
Hdac9XP_008762838.2 ClassIIa_HDAC9_Gln-rich-N 59..148 CDD:197399
HDAC_classIIa 654..1031 CDD:212544 101/394 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.