DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and hdac4

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_005172586.1 Gene:hdac4 / 568877 ZFINID:ZDB-GENE-061013-95 Length:1052 Species:Danio rerio


Alignment Length:463 Identity:113/463 - (24%)
Similarity:187/463 - (40%) Gaps:110/463 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIAY-----LQQ-----VTPQ 77
            ||....|:....|.:...||..:.:..|..||:.:::...||:.::..     |:|     |||.
Zfish   649 HPEHAGRIQSIWSRLQETGLRGQCECIRGRKATLEELQTVHSEAHVLLYGTNPLRQKLDSSVTPM 713

  Fly    78 --NIQCNSV----------AYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDI 130
              .:.|..:          .::...|..:||.   |.|.:|...                     
Zfish   714 FVRLPCGGIGVDSDTIWNEVHSSSAARLAVGS---VVDLVFKVA--------------------- 754

  Fly   131 CINWSGGL-----------HHAKKFEASGFCYVNDIVIGILELLKYH---PRVLYIDIDVHHGDG 181
                ||.|           |||::....||||.|.:.|. .:||:..   .::|.:|.|||||:|
Zfish   755 ----SGELRNGFAVVRPPGHHAEESTPMGFCYFNSVAIA-AKLLQQRLNVSKILIVDWDVHHGNG 814

  Fly   182 VQEAFYLTDRVMTASFHKY--GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGID----DQSYFQV 240
            .|:|||....|:..|.|:|  || ||||:|...|:|...|..::||:....|::    |..|...
Zfish   815 TQQAFYSDPNVLYLSLHRYDDGN-FFPGSGAPDEVGIGPGVGFNVNMAFTGGLEPPMGDADYLAA 878

  Fly   241 FKPIISAIMDFYRPTAIVLQCGADSLAG--DRLGCFSLSTKGHGECVKFVKELNVPTLVVG-GGG 302
            |:.::..|.:.:.|..:::..|.|::.|  ..||.:.|:.|..|...|.:..|....||:. .||
Zfish   879 FRSVVMPIANEFSPDVVLVSSGFDAVEGHPPPLGGYKLTAKCFGYLTKQLMGLAGGRLVLALEGG 943

  Fly   303 YTLRNVARCWTHE--TSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVK 365
            :.|  .|.|...|  .|.|:..:::   |..|             :|..::.|||:.|.:|.:::
Zfish   944 HDL--TAICDASEACVSALLGNELD---PIPE-------------DILQQRPNANAIQSMEKVLE 990

  Fly   366 HVYENLKMCQHSPSVQMVQTPPDVDLEEL-RSNREEASDPDVRISVADEDKLVDAKNEFYDGDQD 429
            ...:..:..|.|.|..      ...|.|. |...|||.......|::..:|        :.|.:.
Zfish   991 VQSKYWRSLQRSVSTL------GYSLREAQRCENEEAETVTAMASLSVANK--------HMGKRP 1041

  Fly   430 QDKPDSAE 437
            :::|...|
Zfish  1042 EEEPMEEE 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 102/411 (25%)
hdac4XP_005172586.1 ClassIIa_HDAC4_Gln-rich-N 62..151 CDD:197398
Arginase_HDAC 623..1025 CDD:450134 108/429 (25%)
Blue background indicates that the domain is not in the aligned region.

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