DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and hdac3

DIOPT Version :9

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_001016883.1 Gene:hdac3 / 549637 XenbaseID:XB-GENE-481106 Length:428 Species:Xenopus tropicalis


Alignment Length:434 Identity:286/434 - (65%)
Similarity:355/434 - (81%) Gaps:9/434 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYI 68
            :.|:|||:.||||||||.||||||.||::|||||::|||:|||.:::||:||..||.||||::||
 Frog     3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYI 67

  Fly    69 AYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICIN 133
            .:||:|:|.|:|    .:||.|..|:||:|||||.|||:||:.||||||:||.:||:...||.||
 Frog    68 DFLQRVSPNNMQ----GFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAIN 128

  Fly   134 WSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFH 198
            |:||||||||||||||||||||||||||||||||||||:|||:||||||||||||||||||.|||
 Frog   129 WAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYVDIDIHHGDGVQEAFYLTDRVMTVSFH 193

  Fly   199 KYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGA 263
            |||||||||||||||:||||||||.:||||::|||||||..:|:|:|..::|||:||.|||||||
 Frog   194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGA 258

  Fly   264 DSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDL 328
            |||..||||||:||.:||||||::||..|:|.||:||||||:||||||||:|||||||:.|..:|
 Frog   259 DSLGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEEL 323

  Fly   329 PATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEE 393
            |.:||:::|||||||||::::|.:|.||:|||:.|.:.::|||||..|:||||:...|.|:    
 Frog   324 PYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPSDI---- 384

  Fly   394 LRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAE 437
            |...|.:..||:.|.| .|.....:|.|||||||.|.||....|
 Frog   385 LSYERTDEPDPEERGS-EDNYSRPEASNEFYDGDHDNDKESDVE 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 266/383 (69%)
hdac3NP_001016883.1 HDAC3 3..383 CDD:212529 266/383 (69%)
Histone deacetylase 3..316 231/316 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 386..428 18/43 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 481 1.000 Domainoid score I413
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H48250
Inparanoid 1 1.050 621 1.000 Inparanoid score I864
OMA 1 1.010 - - QHG62154
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000617
OrthoInspector 1 1.000 - - oto102906
Panther 1 1.100 - - LDO PTHR48252
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9795
SonicParanoid 1 1.000 - - X4957
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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