DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and Hdac1

DIOPT Version :9

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_001020580.1 Gene:Hdac1 / 297893 RGDID:1309799 Length:482 Species:Rattus norvegicus


Alignment Length:430 Identity:249/430 - (57%)
Similarity:334/430 - (77%) Gaps:12/430 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDE 66
            |.|:|.|:|:.||||::||.||||||.|:.:||:|::||||::||:||||:||:|::|.::|||:
  Rat     7 TKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDD 71

  Fly    67 YIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDIC 131
            ||.:|:.:.|.|:.    .|:|.:..|:||||||||||||:||.:.||.|:..|.|||...:||.
  Rat    72 YIKFLRSIRPDNMS----EYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIA 132

  Fly   132 INWSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTAS 196
            :||:||||||||.||||||||||||:.||||||||.||||||||:||||||:||||.||||||.|
  Rat   133 VNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVS 197

  Fly   197 FHKYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQC 261
            |||||.| ||||||:.:|||..|:||:||.||::||||:||..:|||::|.:|:.::|:|:||||
  Rat   198 FHKYGEY-FPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQC 261

  Fly   262 GADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIEN 326
            |:|||:|||||||:|:.|||.:||:|||..|:|.|::||||||:||||||||:||::.:|.:|.|
  Rat   262 GSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPN 326

  Fly   327 DLPATEYYDFFAPDFTLH--PEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDV 389
            :||..:|:::|.|||.||  |   |...|.|:.:|||.|.:.::|||:|..|:|.|||...|.|.
  Rat   327 ELPYNDYFEYFGPDFKLHISP---SNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA 388

  Fly   390 DLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQD 429
            ..||  |..|:..|||.|||:...||.:..:.||.|.|::
  Rat   389 IPEE--SGDEDEEDPDKRISICSSDKRIACEEEFSDSDEE 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 231/385 (60%)
Hdac1NP_001020580.1 HDAC1 4..374 CDD:212534 226/374 (60%)
Histone deacetylase 9..321 201/316 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 390..482 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000617
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100248
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.710

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