DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and Hdac4

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_006529374.1 Gene:Hdac4 / 208727 MGIID:3036234 Length:1100 Species:Mus musculus


Alignment Length:449 Identity:110/449 - (24%)
Similarity:185/449 - (41%) Gaps:78/449 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYT 87
            ||....|:....|.:...||..|.:..|..||:.:::...||:.: ..|....|.|.|       
Mouse   691 HPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAH-TLLYGTNPLNRQ------- 747

  Fly    88 KYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGL-------------- 138
            |..:...:|....||..|  .|.   |..::.....|..||......:.|.              
Mouse   748 KLDSKKLLGSLTSVFVRL--PCG---GVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELK 807

  Fly   139 ----------HHAKKFEASGFCYVNDIVIGILELLKYH---PRVLYIDIDVHHGDGVQEAFYLTD 190
                      |||::....||||.|.:.:. .:||:..   .::|.:|.|||||:|.|:|||...
Mouse   808 NGFAVVRPPGHHAEESTPMGFCYFNSVAVA-AKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDP 871

  Fly   191 RVMTASFHKY--GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGID----DQSYFQVFKPIISAIM 249
            .|:..|.|:|  || ||||:|...|:|...|..::||:....|::    |..|...|:.::..|.
Mouse   872 NVLYMSLHRYDDGN-FFPGSGAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPIA 935

  Fly   250 DFYRPTAIVLQCGADSLAG--DRLGCFSLSTKGHGECVKFVKELNVPTLVVG-GGGYTLRNVARC 311
            :.:.|..:::..|.|::.|  ..||.::||.|..|...|.:..|....||:. .||:.|  .|.|
Mouse   936 NEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRLVLALEGGHDL--TAIC 998

  Fly   312 WTHE--TSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMC 374
            ...|  .|.|:..::|.           .|:..||     ::.|||:...:|.:: .::.....|
Mouse   999 DASEACVSALLGNELEP-----------LPEKVLH-----QRPNANAVHSMEKVM-DIHSKYWRC 1046

  Fly   375 QHSPSVQMVQTPPDVDLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDKP 433
            ..    ::..|.....:|..:..:|||.......|::...|..:.::|  :...:::.|
Mouse  1047 LQ----RLSSTVGHSLIEAQKCEKEEAETVTAMASLSVGVKPAEKRSE--EEPMEEEPP 1099

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 102/402 (25%)
Hdac4XP_006529374.1 ClassIIa_HDAC4_Gln-rich-N <104..165 CDD:197398
HDAC4 665..1073 CDD:212530 106/419 (25%)
Blue background indicates that the domain is not in the aligned region.

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