DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and hdac1

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_005159649.1 Gene:hdac1 / 192302 ZFINID:ZDB-GENE-020419-32 Length:484 Species:Danio rerio


Alignment Length:430 Identity:248/430 - (57%)
Similarity:330/430 - (76%) Gaps:13/430 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDE 66
            |.::|.|:|:.||||::||.||||||.|:.:||:|::||||::||:||||:||:|::|.::|||:
Zfish     8 TKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDD 72

  Fly    67 YIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDIC 131
            ||.:|:.:.|.|:.    .|:|.:..|:||||||||||||:||.:.||.|:.||.|||...:||.
Zfish    73 YIKFLRSIRPDNMS----EYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNKQQTDIA 133

  Fly   132 INWSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTAS 196
            |||:||||||||.||||||||||||:.||||||||.||||||||:||||||:||||.||||||.|
Zfish   134 INWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVS 198

  Fly   197 FHKYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQC 261
            |||||.| ||||||:.:|||..|:||:||.||::||||:||..:||||:|.:|:.|:|:|:||||
Zfish   199 FHKYGEY-FPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPIMSKVMEMYQPSAVVLQC 262

  Fly   262 GADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIEN 326
            |||||:|||||||:|:.|||.:||:::|..|:|.|::||||||:||||||||.||::.:|..|.|
Zfish   263 GADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLGGGGYTIRNVARCWTFETAVALDSTIPN 327

  Fly   327 DLPATEYYDFFAPDFTLH--PEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDV 389
            :||..:|:::|.|||.||  |   |...|.|:..|||.|.:.::|||:|..|:|.|||...|.|.
Zfish   328 ELPYNDYFEYFGPDFKLHISP---SNMTNQNTNDYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA 389

  Fly   390 DLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQD 429
            ..|:   :.:|..|||.|||:...||.:....||.|.:.:
Zfish   390 VQED---SGDEEDDPDKRISIRAHDKRIACDEEFSDSEDE 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 233/385 (61%)
hdac1XP_005159649.1 HDAC1 5..375 CDD:212534 228/374 (61%)

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