DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and hda-1

DIOPT Version :9

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_506599.1 Gene:hda-1 / 179959 WormBaseID:WBGene00001834 Length:461 Species:Caenorhabditis elegans


Alignment Length:430 Identity:235/430 - (54%)
Similarity:315/430 - (73%) Gaps:9/430 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYI 68
            |||:|:|::::||::||.||.|||.|:.:||.||:||||::.::|:||:.||.:||.|||||||:
 Worm    13 RRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRFHSDEYM 77

  Fly    69 AYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICIN 133
            .:|:...|.|::    ::.|.:..|:||||||:||||::||.:.:|.||..|.|||....||.||
 Worm    78 TFLKSANPDNLK----SFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAIN 138

  Fly   134 WSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFH 198
            |.||||||||.|||||||.||||:|||||||||.||||:||||||||||:||||.||||||.|||
 Worm   139 WMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFH 203

  Fly   199 KYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGA 263
            |||: |||||||:.:|||..|:.|||||||::||.|.||..:||||::.:|:.:.|.|:||||||
 Worm   204 KYGD-FFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGA 267

  Fly   264 DSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDL 328
            |||.|||||.|:|:.||||||.:|.:..|||.::|||||||.||||||||:|||:.||:::.|:|
 Worm   268 DSLNGDRLGPFNLTLKGHGECARFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNEL 332

  Fly   329 PATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEE 393
            |..:|:::|.|::.||.| :|...|.||...|..:...|..||:.....|||||...|.|. |..
 Worm   333 PYNDYFEYFGPNYRLHIE-SSNAANENSSDMLAKLQTDVIANLEQLTFVPSVQMRPIPEDA-LSA 395

  Fly   394 LRSNR--EEASDPDVRISVADEDKLVDAKNEFYDGDQDQD 431
            |..:.  .:.::||.|:.....|.::....:||||:::.|
 Worm   396 LNDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGD 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 223/383 (58%)
hda-1NP_506599.1 HDAC_classI 18..323 CDD:212517 194/309 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162460
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000617
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100248
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.640

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