DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HDAC3 and hda-1

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_506599.1 Gene:hda-1 / 179959 WormBaseID:WBGene00001834 Length:461 Species:Caenorhabditis elegans


Alignment Length:430 Identity:235/430 - (54%)
Similarity:315/430 - (73%) Gaps:9/430 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYI 68
            |||:|:|::::||::||.||.|||.|:.:||.||:||||::.::|:||:.||.:||.|||||||:
 Worm    13 RRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRFHSDEYM 77

  Fly    69 AYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICIN 133
            .:|:...|.|::    ::.|.:..|:||||||:||||::||.:.:|.||..|.|||....||.||
 Worm    78 TFLKSANPDNLK----SFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAIN 138

  Fly   134 WSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFH 198
            |.||||||||.|||||||.||||:|||||||||.||||:||||||||||:||||.||||||.|||
 Worm   139 WMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFH 203

  Fly   199 KYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGA 263
            |||: |||||||:.:|||..|:.|||||||::||.|.||..:||||::.:|:.:.|.|:||||||
 Worm   204 KYGD-FFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGA 267

  Fly   264 DSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDL 328
            |||.|||||.|:|:.||||||.:|.:..|||.::|||||||.||||||||:|||:.||:::.|:|
 Worm   268 DSLNGDRLGPFNLTLKGHGECARFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNEL 332

  Fly   329 PATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEE 393
            |..:|:::|.|::.||.| :|...|.||...|..:...|..||:.....|||||...|.|. |..
 Worm   333 PYNDYFEYFGPNYRLHIE-SSNAANENSSDMLAKLQTDVIANLEQLTFVPSVQMRPIPEDA-LSA 395

  Fly   394 LRSNR--EEASDPDVRISVADEDKLVDAKNEFYDGDQDQD 431
            |..:.  .:.::||.|:.....|.::....:||||:::.|
 Worm   396 LNDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGD 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 223/383 (58%)
hda-1NP_506599.1 HDAC_classI 18..323 CDD:212517 194/309 (63%)

Return to query results.
Submit another query.