DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and hda-3

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_493026.1 Gene:hda-3 / 173074 WormBaseID:WBGene00001836 Length:465 Species:Caenorhabditis elegans


Alignment Length:432 Identity:232/432 - (53%)
Similarity:322/432 - (74%) Gaps:10/432 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIA 69
            ||||:|:.|.|||:||.||||||.|:.:||||::||||::|:.:.||.:||..::.|:|||:||.
 Worm     9 RVSYYYDGDFGNFYYGQGHPMKPHRVRMTHSLIVNYGLYRKLNVMRPARASFSEITRYHSDDYIN 73

  Fly    70 YLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICINW 134
            :|:.|...|:.    .:|..:|.||||||||||||:::||.:..|.||..|.:||...|:|.|||
 Worm    74 FLRNVKSDNMS----TFTDQMARFSVGEDCPVFDGMYEFCQLSCGGSLAAAARLNRQESEIAINW 134

  Fly   135 SGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHK 199
            .||||||||.|||||||.||||:.||||||:|.|||||||||||||||:||||.||||||.||||
 Worm   135 MGGLHHAKKSEASGFCYSNDIVLAILELLKHHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHK 199

  Fly   200 YGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGAD 264
            :|.| ||||||:.::||.||:||::||||::|:||.:|.::|:.|:..:|..::|.|:|||||||
 Worm   200 HGEY-FPGTGDLKDVGAGSGKYYALNVPLRDGVDDVTYERIFRTIMGEVMARFQPEAVVLQCGAD 263

  Fly   265 SLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDLP 329
            ||||||||.|:|:|.|||:||:::|..|||.|:|||||||:|||:|||.:||::.::|::.:|||
 Worm   264 SLAGDRLGVFNLTTYGHGKCVEYMKSFNVPLLLVGGGGYTIRNVSRCWLYETAIALNQEVSDDLP 328

  Fly   330 ATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQM--VQTPPD--VD 390
            ..:|:|:|.||:.||.:..:...|.|:.::::..:..:.||||...|.|||||  :.|..|  |.
 Worm   329 LHDYFDYFIPDYKLHIKPLAALSNFNTPEFIDQTIVALLENLKQLPHVPSVQMQSISTSCDSIVK 393

  Fly   391 LEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDK 432
            ..:.:..|:..:| |||::..:||..|:...|||||.:.:.|
 Worm   394 TFDEKLIRDHQND-DVRVTQFEEDVQVEDSAEFYDGQEPETK 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 216/384 (56%)
hda-3NP_493026.1 HDAC_classI 13..318 CDD:212517 188/309 (61%)

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