DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HDAC3 and Hdac3

DIOPT Version :9

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_034541.2 Gene:Hdac3 / 15183 MGIID:1343091 Length:428 Species:Mus musculus


Alignment Length:443 Identity:289/443 - (65%)
Similarity:355/443 - (80%) Gaps:27/443 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYI 68
            :.|:|||:.|||||||||||||||.|||:|||||::|||:|||.:::||:||..||.||||::||
Mouse     3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYI 67

  Fly    69 AYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICIN 133
            .:||:|:|.|:|    .:||.|..|:||:|||||.|||:||:.||||||:||.:||:...||.||
Mouse    68 DFLQRVSPTNMQ----GFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAIN 128

  Fly   134 WSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFH 198
            |:||||||||||||||||||||||||||||||||||||||||:||||||||||||||||||.|||
Mouse   129 WAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFH 193

  Fly   199 KYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGA 263
            |||||||||||||||:||||||||.:||||::|||||||..:|:|:||.::|||:||.|||||||
Mouse   194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGA 258

  Fly   264 DSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDL 328
            |||..||||||:||.:||||||::||..|:|.||:||||||:||||||||:||||||::.|..:|
Mouse   259 DSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEEL 323

  Fly   329 PATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDV---- 389
            |.:||:::|||||||||::::|.:|.||:|||:.|.:.::|||||..|:||||:...|.|:    
Mouse   324 PYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYD 388

  Fly   390 -----DLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAE 437
                 |.|| |...|..|.|             :|.|||||||.|.||....|
Mouse   389 RTDEADAEE-RGPEENYSRP-------------EAPNEFYDGDHDNDKESDVE 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 269/383 (70%)
Hdac3NP_034541.2 HDAC3 3..383 CDD:212529 269/383 (70%)
Histone deacetylase 3..316 235/316 (74%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..424 18/50 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 483 1.000 Domainoid score I400
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H48250
Inparanoid 1 1.050 616 1.000 Inparanoid score I891
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62154
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000617
OrthoInspector 1 1.000 - - oto92610
orthoMCL 1 0.900 - - OOG6_100248
Panther 1 1.100 - - LDO PTHR48252
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9795
SonicParanoid 1 1.000 - - X4957
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.900

Return to query results.
Submit another query.