DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and HDAC6

DIOPT Version :10

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_061502723.1 Gene:HDAC6 / 1271709 VectorBaseID:AGAMI1_007942 Length:1114 Species:Anopheles gambiae


Alignment Length:459 Identity:116/459 - (25%)
Similarity:188/459 - (40%) Gaps:79/459 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVSYFYNADVGNFHYGA--GHPMKPQRLA-VTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDE 66
            ||.|.|:..:......|  .||.:|:|:| :...|..:|.|.::||......|:.:::...|..|
Mosquito   531 RVCYVYDELMLEHRNSAEKWHPEQPERIAKIMQRLTGDYQLAQRMKRLPGRLATTEELCLVHGPE 595

  Fly    67 YIAYLQQVTPQNI------QCNSVAY---TKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQK 122
            ::..:.:|...:.      |.||:.:   |...|..:.|....|.:.:           |||   
Mosquito   596 HVRLIGEVCQSSTMKQTADQYNSIYFHPSTDASARMATGSVLTVVEDV-----------LEG--- 646

  Fly   123 LNHNHSDICINWSGGLHHAKKFEASGFCYVNDIVIGILELLKYH--PRVLYIDIDVHHGDGVQEA 185
              ...|.:|:....| |||:.....|||..|.|.:.....:|.:  .|||.:|.|||||:|.|..
Mosquito   647 --RTRSGVCVVRPPG-HHAEADTPHGFCIYNSIAVAARHAVKRYGLRRVLIVDWDVHHGNGTQHI 708

  Fly   186 FYLTDRVMTASFHKYGN-YFFPGT--GDMYEIGAESGRYYSVNVPL-KEGIDDQSYFQVFKPIIS 246
            |.....|:..|.|:|.| .|||.:  .|...:|:..||.::||:|. ::|:.|..|...|..:|.
Mosquito   709 FEQDPHVLYVSVHRYDNGAFFPRSTDADYTVVGSGPGRGFNVNIPWNRKGMGDPEYVAAFHSVIL 773

  Fly   247 AIMDFYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGG-------GGYT 304
            .|...|.|..:::..|.|:..||.||...::.:.:|.   |.:.|:|   :.||       |||.
Mosquito   774 PIAYEYEPELVLVSAGFDAAIGDPLGGCRVTPEAYGH---FTQWLSV---LAGGRLVLCLEGGYN 832

  Fly   305 LRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYE 369
            :.:::.........|:...:...||.:.  ....|..| |........|..|.|.|      .:.
Mosquito   833 VNSISHAMAMCAKALLGDPLPMLLPVSG--TARTPPAT-HASCCETLSNVLSVQRL------YWR 888

  Fly   370 NLKMCQHSPSVQMVQTPPDVDLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPD 434
            :|...:..||.:.:       |||..|...||.|   .:::::.            |..||.:|.
Mosquito   889 SLCFNKKLPSSEPL-------LEEAGSELIEALD---NMTLSER------------GGTDQQQPQ 931

  Fly   435 SAES 438
            ...|
Mosquito   932 QTTS 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 104/407 (26%)
HDAC6XP_061502723.1 None

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