DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC3 and hdac4

DIOPT Version :9

Sequence 1:NP_651978.2 Gene:HDAC3 / 44446 FlyBaseID:FBgn0025825 Length:438 Species:Drosophila melanogaster
Sequence 2:XP_004917939.1 Gene:hdac4 / 100489340 XenbaseID:XB-GENE-488767 Length:1066 Species:Xenopus tropicalis


Alignment Length:449 Identity:111/449 - (24%)
Similarity:180/449 - (40%) Gaps:88/449 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYT 87
            ||....|:....|.:...||....:..|..||:.:::...||:.: ..|....|.|.|....:..
 Frog   663 HPEHAGRIQSIWSRLQETGLRSMCECIRGRKATLEELQTVHSEAH-TLLYGTNPLNRQKLEGSLA 726

  Fly    88 KYLAHFS---VGEDCPVFDGLFD------FCAMYTGASLEGAQKLNHNHSDICINWSGGL----- 138
            ......|   ||.|.   |.:::      ...:..|..:|.|.|:          .||.|     
 Frog   727 SLFVRLSCGGVGVDS---DTIWNEVHSSGAARLAVGCVVELASKV----------VSGELKNGFA 778

  Fly   139 ------HHAKKFEASGFCYVNDIVIG--ILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTA 195
                  |||::....||||.|.:.|.  :|:......:.|.:|.|||||:|.|:|||....|:..
 Frog   779 VVRPPGHHAEESTPMGFCYFNSVAIAAKVLQQRLNVEKTLIVDWDVHHGNGTQQAFYSDPNVLYI 843

  Fly   196 SFHKY--GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGID----DQSYFQVFKPIISAIMDFYRP 254
            |.|:|  || ||||:|...|:|...|..::||:....|::    |..|...|:.::..|...:.|
 Frog   844 SLHRYDDGN-FFPGSGAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPIAAKFSP 907

  Fly   255 TAIVLQCGADSLAGD--RLGCFSLSTKGHGECVKFVKELNVPTLVVGG-------GGYTLRNVAR 310
            ..:::..|.|::.|.  .||.:::|.|..|...|.:.||      .||       ||:.|  .|.
 Frog   908 DVVLVSAGFDAVEGHPAPLGGYNVSAKCFGYLTKQLMEL------AGGRVVLALEGGHDL--TAI 964

  Fly   311 CWTHE--TSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKM 373
            |...|  .|.|:...:|   |..|             .:..::.|.|:.:.:|.::: :......
 Frog   965 CDASEACVSALLGNKLE---PLPE-------------SVLQQRPNGNAARSMENVIQ-IQSEYWP 1012

  Fly   374 CQHSPSVQMVQTPPDVDLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDK 432
            |.|..|..:..:.    :|..:...|||.......|::     ||.:.|....|:..|:
 Frog  1013 CLHITSSTVAYSL----IEAQKCENEEAETVTAMASLS-----VDVRQERRTEDEPMDE 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC3NP_651978.2 HDAC3 4..388 CDD:212529 101/403 (25%)
hdac4XP_004917939.1 ClassIIa_HDAC4_Gln-rich-N 63..152 CDD:197398
HDAC4 637..1040 CDD:212530 105/420 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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