DRSC/TRiP Functional Genomics Resources

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Protein Alignment mEFTu1 and eEF1alpha2

DIOPT Version :9

Sequence 1:NP_001163144.1 Gene:mEFTu1 / 44438 FlyBaseID:FBgn0024556 Length:489 Species:Drosophila melanogaster
Sequence 2:NP_524611.1 Gene:eEF1alpha2 / 43736 FlyBaseID:FBgn0000557 Length:462 Species:Drosophila melanogaster


Alignment Length:488 Identity:148/488 - (30%)
Similarity:225/488 - (46%) Gaps:105/488 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 RTKPHCNVGTIGHVDHGKTTLT-------AAITKVLADKQLAESKKYNE--------IDNAPEEK 127
            :.|.|.|:..|||||.||:|.|       ..|.|...:|...|:::..:        :|....|:
  Fly     3 KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67

  Fly   128 ARGITINVAHVEYQTETRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGAMP-------Q 185
            .|||||::|..:::|...:....|.|||.|:||||||||:|.|.|:|:|||..|...       |
  Fly    68 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 132

  Fly   186 TREHMLLAKQIGIDHIVVFINKVDAAD----EEMVDLVEMEIRELLTEMGYD------------- 233
            ||||.|||..:|:..::|.:||:|:.:    |...:.::.|:...:.::||:             
  Fly   133 TREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPASVAFVPISGWH 197

  Fly   234 GD-------KIPVVKGSALCALEDKSPEIGKEAILKLLQEVDSFIPTPVRELDKPFLLPVENVYS 291
            ||       |:|..||.::...|.|:.  ||    .|:..:|:.:| |.|..|||..||:::||.
  Fly   198 GDNMLEPSEKMPWFKGWSVERKEGKAE--GK----CLIDALDAILP-PQRPTDKPLRLPLQDVYK 255

  Fly   292 IPGRGTVVTGRLERGVVKKGMECEFVGYNKVLKSTVTGVEMFHQILEEAQAGDQLGALVRGVKRD 356
            |.|.|||..||:|.|::|.||...|...|  |.:.|..|||.|:.|.||..||.:|..|:.|...
  Fly   256 IGGIGTVPVGRVETGLLKPGMVVNFAPVN--LVTEVKSVEMHHEALTEAMPGDNVGFNVKNVSVK 318

  Fly   357 DIKRGMVM--CKPGSVKALDQLEAQVYILS---KDEGGRTKPFMSFIQLQMFSRTWDCAVQ---- 412
            :::||.|.  .|....:......|||.:|:   :...|.| |.:            ||...    
  Fly   319 ELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYT-PVL------------DCHTAHIAC 370

  Fly   413 --VQIPDK-------------EMVMPGEDTKLILRLIRPMVLEQGQ------RFTLRDGNLTLGT 456
              .:|.:|             :.:..|:...::|...:|:.:|..|      ||.:||...|:..
  Fly   371 KFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 435

  Fly   457 GVVTSTLPPLTESQRSELTEGKKAREKKVAAKK 489
            ||:.|.       ...|.|.||..:..:.|.||
  Fly   436 GVIKSV-------NFKETTSGKVTKAAEKAQKK 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFTu1NP_001163144.1 PRK00049 73..463 CDD:234596 141/460 (31%)
EF_Tu 81..274 CDD:206671 75/238 (32%)
EFTU_II 282..368 CDD:293898 36/87 (41%)
mtEFTU_III 371..462 CDD:294005 23/118 (19%)
eEF1alpha2NP_524611.1 PTZ00141 1..450 CDD:185474 143/475 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464545
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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