DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec13 and sec13

DIOPT Version :9

Sequence 1:NP_001287480.1 Gene:Sec13 / 44437 FlyBaseID:FBgn0024509 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_596692.1 Gene:sec13 / 2540716 PomBaseID:SPBC215.15 Length:297 Species:Schizosaccharomyces pombe


Alignment Length:306 Identity:147/306 - (48%)
Similarity:196/306 - (64%) Gaps:29/306 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALAE-LKGHQGPVWQVAWAHPKFGN 71
            :||:|:||:|.|.||:||..|||||||.::::|....|.:.|.| |:||.|||||:.|||||||.
pombe     4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGT 68

  Fly    72 ILASCSYDRKVIVWKSTTPRDWTKLYEYSNHDSSVNSVDFAPSEYGLVLACASSDGSVSVL---- 132
            ||||.|||..||||:. |...|::|.:::.|.:|||:|.:||.|||.:||||||||.||||    
pombe    69 ILASASYDGHVIVWRE-TGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKD 132

  Fly   133 --TCNTEYGVWDAKKIPNAHTIGVNAISWCPAQAPDPAFDQRVTSRSAAV--KRLVSGGCDNLVK 193
              :|:|        :|..||..|.||:.|.|     |:....|..:|.|.  |:|.:.|||||||
pombe   133 DGSCDT--------RIFTAHEPGCNAVCWSP-----PSLSGSVVGQSPAAGPKKLATAGCDNLVK 184

  Fly   194 IWREDN--DRWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLSEWTSTV 256
            ||..|.  :.|:.|..|..|.||.||||||||:||.::.:|:||||::|.:|:...| ..|..|.
pombe   185 IWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGD-GPWQKTP 248

  Fly   257 L--HTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN 300
            |  ..|.|..|.:|||.:||||||:.|||.|.|:|| ::.:|..:|
pombe   249 LTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKE-SQNKWQLLN 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec13NP_001287480.1 WD40 10..289 CDD:392136 142/291 (49%)
WD40 repeat 60..101 CDD:293791 23/40 (58%)
WD40 repeat 106..148 CDD:293791 23/47 (49%)
WD40 repeat 155..207 CDD:293791 22/55 (40%)
WD40 repeat 215..256 CDD:293791 19/40 (48%)
WD40 repeat 264..290 CDD:293791 15/25 (60%)
sec13NP_596692.1 WD40 3..283 CDD:295369 143/293 (49%)
WD40 6..>292 CDD:225201 145/301 (48%)
WD40 repeat 57..97 CDD:293791 23/40 (58%)
WD40 repeat 102..142 CDD:293791 23/47 (49%)
WD40 repeat 149..198 CDD:293791 21/53 (40%)
WD40 repeat 208..253 CDD:293791 21/45 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1332
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6479
Inparanoid 1 1.050 280 1.000 Inparanoid score I673
OMA 1 1.010 - - QHG53827
OrthoFinder 1 1.000 - - FOG0003364
OrthoInspector 1 1.000 - - oto101629
orthoMCL 1 0.900 - - OOG6_101941
Panther 1 1.100 - - LDO PTHR11024
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1303
SonicParanoid 1 1.000 - - X2253
TreeFam 1 0.960 - -
1312.860

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