DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec13 and npp-18

DIOPT Version :9

Sequence 1:NP_001287480.1 Gene:Sec13 / 44437 FlyBaseID:FBgn0024509 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_499740.1 Gene:npp-18 / 176748 WormBaseID:WBGene00003804 Length:363 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec13NP_001287480.1 WD40 10..289 CDD:392136
WD40 repeat 60..101 CDD:293791
WD40 repeat 106..148 CDD:293791
WD40 repeat 155..207 CDD:293791
WD40 repeat 215..256 CDD:293791
WD40 repeat 264..290 CDD:293791
npp-18NP_499740.1 WD40 <5..250 CDD:295369
WD40 11..>338 CDD:225201
WD40 repeat 21..60 CDD:293791
WD40 repeat 65..115 CDD:293791
WD40 repeat 123..162 CDD:293791
WD40 repeat 174..220 CDD:293791
WD40 repeat 228..265 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D375879at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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