DRSC/TRiP Functional Genomics Resources

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Protein Alignment MSI1 and Rox8

DIOPT Version :10

Sequence 1:NP_002433.1 Gene:MSI1 / 4440 HGNCID:7330 Length:362 Species:Homo sapiens
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:397 Identity:94/397 - (23%)
Similarity:142/397 - (35%) Gaps:100/397 - (25%)


- Green bases have known domain annotations that are detailed below.


Human    22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQSRHEL 85
            :|:|.||.:...|.|||.|..|||:..|.::|||.|.:|:|:.||:|:.:|..:..: |.:...:
  Fly    97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWI 161

Human    86 DSKTI-----DPKVAFPR-----------------------------------RAQPKMVTRTKK 110
            .|::|     ..|:..||                                   ::.|...|    
  Fly   162 GSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTT---- 222

Human   111 IFVGGLSVNTTVED-VKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFH-- 172
            ::.||...|...:| :.::|.|||.:.|..:..||      ||.|:.|.:::......| |.|  
  Fly   223 VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDK------GFSFIKFVTKEAAAHAIE-HTHNS 280

Human   173 EINNKMVEC---------KKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA 228
            |::..:|:|         ..|......:...:|......:.....|...|.||   ||...|...
  Fly   281 EVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGM---PGQMMTQQQ 342

Human   229 SRSYTGLA-PG-----------YTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAA 281
            ..:.||.| ||           |.|.:.:......| .:.|.....|......|.|.|...:|  
  Fly   343 IAAATGAAIPGQMMTPQQIAAQYPYAYQQMGYWYPP-ATYPTTQMQTQYMQQGYYPYAYPTSA-- 404

Human   282 VVRGTGSHP--------WTMAPPPGSTPSRTGGFLGTTSPG---PMAELYGAANQDSGVSSYISA 335
              :..|..|        :.|.|     |:...|..||..||   ..|....|||.........||
  Fly   405 --QQAGGVPCIQFSAAGYRMVP-----PNVAWGVPGTVVPGVTAAAASAAAAANGSLAPQMMYSA 462

Human   336 ASPAPST 342
            |.|...|
  Fly   463 AMPQYQT 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MSI1NP_002433.1 RRM1_MSI 21..96 CDD:409990 27/79 (34%)
PABP-1234 <32..339 CDD:130689 88/382 (23%)
RRM2_MSI 110..183 CDD:240769 21/84 (25%)
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 26/72 (36%)
RRM_SF 221..292 CDD:473069 22/81 (27%)
Blue background indicates that the domain is not in the aligned region.

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