DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpp30 and SPAC3A12.04c

DIOPT Version :9

Sequence 1:NP_001259808.1 Gene:Rpp30 / 44392 FlyBaseID:FBgn0283652 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_593330.1 Gene:SPAC3A12.04c / 2543062 PomBaseID:SPAC3A12.04c Length:235 Species:Schizosaccharomyces pombe


Alignment Length:238 Identity:57/238 - (23%)
Similarity:111/238 - (46%) Gaps:21/238 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FYDFSIPYN----KDDSVLRALLNELVETGYKTVAIDQSFDHSKKDPGKRG--SEMFPEPHKIEH 65
            |.|.::.:.    ||.::::. :..|...||..:|::..:|...::..|..  .|::||      
pombe     2 FIDLNVVWPTLGVKDLNLVKT-VKTLERLGYTAIALNYQYDGKLQNVIKNPIVKELYPE------ 59

  Fly    66 LRKEFQDKLRILQRITILYVDVNVAHAMSVSHNLRKFNLIAGQPKTDAALTHCCTAFNGDLITFD 130
                  .|::|..|||:..  .::.....:|:..::|:::|.:|..|..|...|:....|:::.|
pombe    60 ------QKIKIYSRITLTI--ESMPQNKVLSNVTKEFDILAIRPIGDRLLQQTCSDLEFDILSID 116

  Fly   131 PVAGSRLLVNRKAYQVAVRRGMFFEIKYAPSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAH 195
            ........:......:||.|.:..||.|:..:.|.:||:::|..|.:.....:.:.:|.:|....
pombe   117 FTQRLPFYLKHTFMGLAVSRDIGIEISYSSGLRDVSNRRNLITNATSLVRATRGRGIIVTSETRT 181

  Fly   196 EFQLRGPYDVANLAFIFGLSEDQGKNAVDGHCRELFLKAEARR 238
            ..:.|..:||.|||..:.|.:||.:.:|...||.:.|.||.||
pombe   182 PLECRAGFDVINLATFWDLKQDQARKSVGESCRSVLLHAETRR 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpp30NP_001259808.1 RNase_P_p30 8..226 CDD:280117 49/223 (22%)
SPAC3A12.04cNP_593330.1 RNase_P_p30 3..212 CDD:280117 49/223 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 64 1.000 Domainoid score I2887
eggNOG 1 0.900 - - E1_COG1603
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38180
Inparanoid 1 1.050 77 1.000 Inparanoid score I1879
OMA 1 1.010 - - QHG54344
OrthoFinder 1 1.000 - - FOG0004460
OrthoInspector 1 1.000 - - oto101728
orthoMCL 1 0.900 - - OOG6_102854
Panther 1 1.100 - - LDO PTHR13031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1168
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.860

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