DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nnp-1 and Rrp1b

DIOPT Version :9

Sequence 1:NP_651976.1 Gene:Nnp-1 / 44391 FlyBaseID:FBgn0022069 Length:687 Species:Drosophila melanogaster
Sequence 2:XP_228076.4 Gene:Rrp1b / 309673 RGDID:1305633 Length:733 Species:Rattus norvegicus


Alignment Length:693 Identity:176/693 - (25%)
Similarity:290/693 - (41%) Gaps:115/693 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 EVKIIRALACNDVVERNRQIRILRKWFKARAGS-SFPFNEDDFMRIWKGLYYTMWMSDKPLVQEE 103
            |::..:.||.::...|:|.:|.||::..||..| :..|::::.::|||||:|.||:.|:||:|||
  Rat     9 ELQFAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEE 73

  Fly   104 LAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLMLTRRMVRYLLRFLKQNNW 168
            ||..::|::.....:.|..| :...|.:|:.:|:.|||:.|:||:.||.|.::|.....||:|.|
  Rat    74 LANIISQLIHVVNSSEAQHL-FIQTFWQTVNREWQGIDKLRLDKYYMLIRLVLRQSFEVLKRNAW 137

  Fly   169 NADLIAAFNSSMQLSVMSEQPKS-RGMTMHYLDVFFEELAKAANGEITAAQVNMFLRPFVTYIAT 232
            ....|..|...:...::|.:.:| .|:..|.:||:.:||:.....|:.|.|....:.||....|.
  Rat   138 EESQITLFLDILMKEILSPESRSPNGVRSHLIDVYLDELSTVGGRELLADQNLKLIDPFCRIAAK 202

  Fly   233 QRDAKLVAQCRTRVLYHLMYQSDLGRQYSEKYNAWKQ--MGFPTASIDDIEKLDSG----FDE-- 289
            .:|..||......|...::.||....:.|.:....|:  .|.|...: ..:|:..|    .||  
  Rat   203 TKDHTLVQTVAKGVFEVIVDQSAFVPEESVEEQKTKEDGNGLPANEL-ACQKVVGGKKTALDECL 266

  Fly   290 EDDEVNAEEEQPRATSLDPRAGNVDVHMPELPLNAD--CVLD---ELQTQLRTNDFNSKRRKGLR 349
            .|..:.:.|....|...|  :|:        ||..|  .|.|   |:.....|..||.||   |.
  Rat   267 RDGVIGSRERDICAALKD--SGS--------PLQFDYKAVADRLLEIANSKSTPPFNRKR---LC 318

  Fly   350 KLIQIFETYQRG---EFPLGVRTMPKVEGQTLSE---------MVEQKVAALDKME-DEVFATGR 401
            :|::.|:....|   :............||.||:         ::|:  |||::.| :.|.|.|.
  Rat   319 RLVRKFQDLSEGNGAQLSFAEDISAGENGQALSQRRHKRKRKKLLER--AALEREEGNTVSAAGE 381

  Fly   402 K-----LKKLNKSKRKRLLQSINFEEVDEHNYDEVISKALPPELQKKVNYNAKVRSSINNAWVVE 461
            :     :.|..:.||||    .:|:. |..:...|...|:|....:.   .|..|.:: .|.|..
  Rat   382 EDGGGHIHKRKRKKRKR----SHFQS-DTQDLGSVAEAAVPSADSEP---GAAQRHAL-QACVAA 437

  Fly   462 EVKEAEPKSKKAKKEEPPQQNKDDQTKVKKKSQLK-----------PKNDQSK-PKIEDQPTL-- 512
            ...||...:::...|..|......:.|.::|..|:           |:.|.|| .....||..  
  Rat   438 PTAEATSNTRENSSEPTPATPIHSKRKRQRKKNLRAHREIWKSTTLPQEDVSKNDPASGQPQTAL 502

  Fly   513 --KAEKEEPAKRKK----LDHSKTKEEQSKPKTDEQPKPTPKVEGQSKAKPTPKTKAAGVDDDAP 571
              .:|..:..|||:    |..|.......|..|     |...|||.......|:.|.:  .....
  Rat   503 ISSSEGGQARKRKRKLGALPVSSGDLTVQKAGT-----PASPVEGNDGQTTLPRCKRS--QKKTA 560

  Fly   572 TNGWDAPLEDGEQDIFVPSRKLQVKQ-ANSKLPQS-----------TPKQPARAEFATPQTGSGK 624
            :|..| ..:...|...:..::.::|| :|..|..|           |.|:|.:.|        ..
  Rat   561 SNTLD-HYDPSSQKTAISKKRKKMKQTSNGVLECSAGQIQALGSNRTLKKPLKME--------DD 616

  Fly   625 HVRIVTKSNCIYPKSDYYRQLKLS----PQVP-YDANRLPGKS 662
            .|:..|:   ..||:.::|:.|.|    ||.| ...|:.|..|
  Rat   617 LVKFDTR---FLPKALFFRKAKNSSATRPQGPTVQLNKTPSSS 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nnp-1NP_651976.1 Nop52 41..247 CDD:283618 66/207 (32%)
Rrp1bXP_228076.4 Nop52 10..218 CDD:283618 67/208 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353424
Domainoid 1 1.000 129 1.000 Domainoid score I5117
eggNOG 1 0.900 - - E1_KOG3911
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 131 1.000 Inparanoid score I4535
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1337189at2759
OrthoFinder 1 1.000 - - FOG0003215
OrthoInspector 1 1.000 - - otm45914
orthoMCL 1 0.900 - - OOG6_102179
Panther 1 1.100 - - LDO PTHR13026
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2173
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.850

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