DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CIII and mamdc2b

DIOPT Version :10

Sequence 1:NP_524747.1 Gene:Sr-CIII / 44382 FlyBaseID:FBgn0020376 Length:320 Species:Drosophila melanogaster
Sequence 2:XP_017213507.1 Gene:mamdc2b / 798369 ZFINID:ZDB-GENE-091117-16 Length:698 Species:Danio rerio


Alignment Length:369 Identity:80/369 - (21%)
Similarity:130/369 - (35%) Gaps:131/369 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SCEPDILLRNGKVTELSSWLLGDSIKFECNPGFSLQ-GKTWHLGNGNM--MKRYCAK-------- 79
            |.:|:|.:.....|...|:||       .|...||| |....|...:|  .::||.|        
Zfish   370 SVKPNIYMTGDHTTGAGSFLL-------ANSRLSLQSGYVSRLFGPSMPGSQKYCLKFFYSLRGL 427

  Fly    80 AGCNDI--------------------EKQANGTI---LTATDGLKAEIECDDEFVLSGNSFTYCN 121
            :|.:..                    ||..|..|   ||.....||::    .|:.:......| 
Zfish   428 SGADQALSVYLYYSDSSKHEQMWTQNEKIRNVWIAVELTIQSEKKAQV----VFISTCKDIWSC- 487

  Fly   122 GTKWI--IKL--GTCQL--ANS--VGDHSCDFEREDMCG-----------WRASKAIPQPWKRIS 167
            |:..:  ||:  |.|.|  |:|  :..| |||| ..:||           |..::. |.|.....
Zfish   488 GSVGLDDIKVTPGDCSLLAASSLLLPSH-CDFE-SGLCGFSQDKVGDSGDWYLARG-PTPTSYTG 549

  Fly   168 AAADFLKEKCLQQDHTFQSDVEGHFIRLQSQVHASRTYHFISPIYPRNLTVGH------------ 220
            ...          |||...   ||::.:::.|                :..||            
Zfish   550 PGG----------DHTTGL---GHYMHIEASV----------------MLAGHKARLLSSTLRGT 585

  Fly   221 --SLWFQFELFMFGSEVRNLTISVKPSSMAVED--MWNSFRNICTKLTVSGDQGPNWKSQSISID 281
              :...||...|:||.:..|::.:: :....:|  :|.|          .|:||.:|...|::. 
Zfish   586 RETQCLQFYYHMYGSGIGQLSVYLQ-TGQENDDRLLWTS----------HGEQGISWLRASLNY- 638

  Fly   282 EMESDFQVVFTVVDPSSLHGDIGIDDVKFIK------SETNEPH 319
            ..:...|:||.....:|:..||.:||:.|.:      |:.:.||
Zfish   639 HYDQQHQIVFEATRGASVRSDIAVDDIIFERGPCREYSDQHIPH 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIIINP_524747.1 CCP 27..>62 CDD:153056 10/35 (29%)
MAM 143..310 CDD:459878 39/193 (20%)
mamdc2bXP_017213507.1 MAM 41..175 CDD:99706
MAM 178..334 CDD:99706
MAM 349..502 CDD:459878 32/143 (22%)
MAM 516..672 CDD:99706 40/198 (20%)
Blue background indicates that the domain is not in the aligned region.

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