DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sr-CIII and si:ch211-106h4.4

DIOPT Version :10

Sequence 1:NP_524747.1 Gene:Sr-CIII / 44382 FlyBaseID:FBgn0020376 Length:320 Species:Drosophila melanogaster
Sequence 2:XP_068070223.1 Gene:si:ch211-106h4.4 / 559790 ZFINID:ZDB-GENE-070705-14 Length:2390 Species:Danio rerio


Alignment Length:338 Identity:71/338 - (21%)
Similarity:126/338 - (37%) Gaps:98/338 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 YMVIQSIASCEPDILLRNGKVTELSSWLLGDSIKFECNPGFSLQGKT---WHLGNGNMMKRYCAK 79
            :|.|.|:.|.:|.      :...|.|              |..|.|.   |:|..|..:      
Zfish   256 FMYIGSLRSSKPP------QTARLIS--------------FPQQAKCVSFWYLMYGGRI------ 294

  Fly    80 AGCNDIEKQANG--TIL---TATDGLK--------AEIECDDEFVLSGNSFTYCNGTKWIIKLGT 131
            .....:.|..||  |::   |...|.|        |:.:...:|:..|...|    ::..|.:..
Zfish   295 GSLKFLIKHTNGEQTLMWMRTGNQGNKWRFVDLSFADSKEPIQFIFEGILET----SEGYIAIDD 355

  Fly   132 CQLANSVGDHSCDFERE-----DMCGWRASKAIPQPWKRISAAADFLKEKCLQQDHTFQSDVEGH 191
            .|::.|: :.||..|||     .:||..:.......|.|...... :.......|||.::| :|.
Zfish   356 VQVSGSI-NGSCPAERECTFQGSLCGLSSDLTTDFTWIRTKGELS-IGTPSPATDHTLETD-KGF 417

  Fly   192 FI-------------RLQSQVHASRTYHFISPIYPRNLTVGHSLWFQFELFMFGSEVRNLTISVK 243
            ::             |:.::|::..:.|            |..|.|.::  |.|.:|.:|.|.|:
Zfish   418 YLSAQLWKNPSGSRGRMMTEVNSPTSEH------------GECLMFWYQ--MNGKDVGSLNIYVQ 468

  Fly   244 ---PSSMAVEDMWNSFRNICTKLTVSGDQGPNWKSQSISIDEMESDFQVVFTVVDPSSLHGDIGI 305
               .|.::...:|          :|:||||..|:....::....|.::::|..|..:....||.|
Zfish   469 DVLSSKISQISVW----------SVNGDQGQKWRHGRATVRSPHSSYKIIFEAVVGNEREHDIAI 523

  Fly   306 DDVKFIKSETNEP 318
            ||:..:    |:|
Zfish   524 DDLTIL----NDP 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIIINP_524747.1 CCP 27..>62 CDD:153056 4/34 (12%)
MAM 143..310 CDD:459878 41/187 (22%)
si:ch211-106h4.4XP_068070223.1 LDLa 6..41 CDD:238060
MAM 44..198 CDD:459878
MAM 211..366 CDD:99706 27/140 (19%)
MAM 372..533 CDD:99706 39/191 (20%)
MAM 539..696 CDD:99706
MAM 720..876 CDD:99706
MAM 882..1033 CDD:459878
MAM 1038..1187 CDD:99706
MAM 1200..1353 CDD:99706
LDLa 1363..1397 CDD:238060
MAM 1406..1555 CDD:459878
LDLa 1597..1634 CDD:238060
MAM 1633..1792 CDD:214533
MAM 1806..1962 CDD:99706
MAM 1969..2126 CDD:99706
MAM 2132..2294 CDD:99706
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.