DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CIII and Sr-CII

DIOPT Version :9

Sequence 1:NP_524747.1 Gene:Sr-CIII / 44382 FlyBaseID:FBgn0020376 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001188908.1 Gene:Sr-CII / 44219 FlyBaseID:FBgn0020377 Length:599 Species:Drosophila melanogaster


Alignment Length:311 Identity:136/311 - (43%)
Similarity:191/311 - (61%) Gaps:11/311 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VEILWALRLFMIYMVIQSIASCEPDILLRNGKVTELSSWLLGDSIKFECNPGFSLQGKTWHL--- 67
            ::...||.|.:.|.:..:..|||..:.|.||:....|:.|    :.|:||.||.|||.:.|.   
  Fly     1 MQFFLALTLILAYSLDTANGSCEGSLDLENGRFFTRSNNL----VIFQCNRGFVLQGNSIHTCDR 61

  Fly    68 -GNGNMMKRYCAKAGCNDIEKQANGTILTATDGLKAEIECDDEFVLSGNSFTYCNGTKWIIKLGT 131
             |.....|.:||:.||:..|...||.:|  .:.:||||.|.|.|||.|:...:|:|.||..:||.
  Fly    62 DGRLREKKPFCARKGCDKPEDPTNGYVL--DNPVKAEIVCLDGFVLYGSRTAFCDGEKWSTQLGA 124

  Fly   132 CQLANSVGDHSCDFEREDMCGWRASKAIPQPWKRISAAADFLKEKC-LQQDHTFQSDVEGHFIRL 195
            |:.:|...|||||||.||.|||.|.:.|..|||||||..||...:. .:.||||.:...||::|:
  Fly   125 CRRSNHTMDHSCDFESEDQCGWSAEETIWLPWKRISAVTDFHHPRTGPRYDHTFGNTSGGHYMRM 189

  Fly   196 QSQVHASRTYHFISPIYPRNLTVGHSLWFQFELFMFGSEVRNLTISVKPSSMAVEDMWNSFRNIC 260
            ::|:.|..:|||:||:|||:|.:..:..|:|..||||:.|..|.:||||:|:.::|||||||:..
  Fly   190 ETQIEAYGSYHFVSPVYPRSLCLNVACCFRFHYFMFGAGVDRLVLSVKPASLQIDDMWNSFRSNS 254

  Fly   261 TKLTVSGDQGPNWKSQSISIDEMESDFQVVFTVVDPSSLHGDIGIDDVKFI 311
            :|..::|.||.:|...:|:||:|..|||||||..|..|..|||.|||||.:
  Fly   255 SKFEITGSQGTHWLENTITIDKMHEDFQVVFTATDARSQFGDIAIDDVKLM 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIIINP_524747.1 CCP 27..>62 CDD:153056 13/34 (38%)
MAM 143..310 CDD:279023 83/167 (50%)
MAM 143..310 CDD:99706 83/167 (50%)
Sr-CIINP_001188908.1 CCP 22..72 CDD:153056 18/53 (34%)
CCP 77..125 CDD:214478 21/49 (43%)
MAM 136..312 CDD:279023 84/170 (49%)
MAM 136..308 CDD:99706 84/170 (49%)
Somatomedin_B 341..387 CDD:279385
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470082
Domainoid 1 1.000 66 1.000 Domainoid score I9895
eggNOG 1 0.900 - - E1_2CMY0
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006092
OrthoInspector 1 1.000 - - mtm9576
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.840

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