DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CIII and Mamdc2

DIOPT Version :10

Sequence 1:NP_524747.1 Gene:Sr-CIII / 44382 FlyBaseID:FBgn0020376 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001094166.1 Gene:Mamdc2 / 309410 RGDID:1305129 Length:686 Species:Rattus norvegicus


Alignment Length:320 Identity:69/320 - (21%)
Similarity:120/320 - (37%) Gaps:70/320 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LLRNGKVTELSSWLLGDSIKFECNPGF--SLQGKTWHLGNGNMMKRYCAKAGC------------ 82
            :.|.|..|..:...|..:.||...||:  .|.|.:.   .|||  :||.:...            
  Rat   369 MYRTGDHTTGTGHYLLANTKFTSQPGYIGRLYGPSL---PGNM--QYCVRFHYAIIGFLKMSDTL 428

  Fly    83 -------NDIEKQANGTILTATDG--LKAEIECDDE------FVLSGNSFTYCNGTKW---IIKL 129
                   |.:.::...::|.:..|  ::||:.....      |:....||..|.....   .|:|
  Rat   429 AVYIFEENHVVQEKIWSVLESPRGVWMQAEVSFKKPMPTKVVFMSLCKSFWDCGLVALDDITIQL 493

  Fly   130 GTC----QLANSVGDHSCDFEREDMCGWRASKAIPQPWK--RISAAADFLKEKCLQQDHTFQSDV 188
            |.|    :|....|:  |.|: :|.|.:...|.....|.  |......:...|   .|||  :.|
  Rat   494 GNCRSPERLPPPPGE--CTFD-QDECAFTQEKRNRSSWHRGRGETPTSYTGPK---GDHT--TGV 550

  Fly   189 EGHFIRLQS--QVHASRTYHFISPIYPRNLTVGHSLWFQFELFMFGSEVRNLTISVKPSSMAVED 251
             |:::.:::  .|:..:.:....|:  |.:...|.|.|.:.  |:|:....|::.:|....:.|.
  Rat   551 -GYYMYIEASHMVYGQKAHLLSQPL--RGVPGKHCLIFFYH--MYGAGTGLLSVYLKREEDSKES 610

  Fly   252 -MWNSFRNICTKLTVSGDQGPNWKSQSISIDEMESDFQVVFTVVDPSSLHGDIGIDDVKF 310
             :|..          .|:|..:|....:.... ....|::|..:...|:..||.||||||
  Rat   611 LLWRR----------KGEQSISWLRALVEYSS-RRQHQIIFEAIRGVSIRSDIAIDDVKF 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIIINP_524747.1 CCP 27..>62 CDD:153056 9/31 (29%)
MAM 143..310 CDD:459878 37/171 (22%)
Mamdc2NP_001094166.1 MAM 26..167 CDD:99706
MAM 170..327 CDD:459878
MAM 342..497 CDD:459878 27/132 (20%)
MAM 509..664 CDD:99706 39/173 (23%)
Blue background indicates that the domain is not in the aligned region.

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