DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CIII and Mep1b

DIOPT Version :9

Sequence 1:NP_524747.1 Gene:Sr-CIII / 44382 FlyBaseID:FBgn0020376 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_032612.2 Gene:Mep1b / 17288 MGIID:96964 Length:704 Species:Mus musculus


Alignment Length:229 Identity:52/229 - (22%)
Similarity:84/229 - (36%) Gaps:80/229 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 IIKLGTCQLANSVGD----HSCDFEREDMCGWRASKAIPQPWKRISAAADFLKEKCLQQDHT--- 183
            ::||.  ||.|....    .|||||.|::||...|......|:|:|...     ...:.||:   
Mouse   247 LLKLN--QLYNCTSSLSFMDSCDFELENICGMIQSSGDSADWQRVSQVL-----SGPESDHSKMG 304

  Fly   184 ----------FQSDV--EGHFIRLQSQVHASRTYHFISPIYPRNLTVGHSLWFQ-FELFMFGSEV 235
                      |.:.:  ||....|:|::           :||:.       .|| .|.:::.|  
Mouse   305 QCKDSGFFMHFNTSILNEGATAMLESRL-----------LYPKR-------GFQCLEFYLYNS-- 349

  Fly   236 RNLTISVKPSSMAVEDMWNSFRNICTKLTVSGDQG--------------PNWKSQSISIDEMESD 286
                           ...|...||.|:...:|.||              .:|:...::: ::...
Mouse   350 ---------------GSGNDQLNIYTREYTTGQQGGVLTLQRQIKEVPIGSWQLHYVTL-QVTKK 398

  Fly   287 FQVVFT-VVDPSSLHGDIGIDDVKFIKSETNEPH 319
            |:|||. :..|.:..|.:.|||:..  |||..||
Mouse   399 FRVVFEGLRGPGTSSGGLSIDDINL--SETRCPH 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIIINP_524747.1 CCP 27..>62 CDD:153056
MAM 143..310 CDD:279023 41/197 (21%)
MAM 143..310 CDD:99706 41/197 (21%)
Mep1bNP_032612.2 ZnMc 30..256 CDD:294052 4/10 (40%)
Astacin 70..258 CDD:279708 5/12 (42%)
MAM 266..430 CDD:279023 44/206 (21%)
MAM 266..428 CDD:99706 44/204 (22%)
MATH 428..587 CDD:295307 2/3 (67%)
EGF_CA 609..647 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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