DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sr-CIII and MAMDC4

DIOPT Version :9

Sequence 1:NP_524747.1 Gene:Sr-CIII / 44382 FlyBaseID:FBgn0020376 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_996803.2 Gene:MAMDC4 / 158056 HGNCID:24083 Length:1137 Species:Homo sapiens


Alignment Length:176 Identity:41/176 - (23%)
Similarity:75/176 - (42%) Gaps:30/176 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 SCDFEREDMCGWRASKAIPQPWKRISAAADFLKEKCLQQDHTFQSDVEGHFIRLQSQVHASRTYH 206
            :|||| :|.||||........|.|..|.| .|:......|||..:|: |.::.:.:  |..:.  
Human    65 ACDFE-QDPCGWRDISTSGYSWLRDRAGA-ALEGPGPHSDHTLGTDL-GWYMAVGT--HRGKE-- 122

  Fly   207 FISPIYPRNLTVGHS-------LWFQFELFMFGSEVRNLTISVKPSSMAVEDMWNSFRNICTKLT 264
             .|....|:.|:..:       ||:.    ....:|..|.:.:...:..: .:|.|         
Human   123 -ASTAALRSPTLREAASSCKLRLWYH----AASGDVAELRVELTHGAETL-TLWQS--------- 172

  Fly   265 VSGDQGPNWKSQSISIDEMESDFQVVFTVVDPSSLHGDIGIDDVKF 310
             :|..||.|:..:::...:..||:|.|:....::..|.:.:||::|
Human   173 -TGPWGPGWQELAVTTGRIRGDFRVTFSATRNATHRGAVALDDLEF 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIIINP_524747.1 CCP 27..>62 CDD:153056
MAM 143..310 CDD:279023 40/173 (23%)
MAM 143..310 CDD:99706 40/173 (23%)
MAMDC4NP_996803.2 MAM 63..219 CDD:214533 41/176 (23%)
MAM 66..219 CDD:99706 41/175 (23%)
LDLa 229..261 CDD:238060
MAM 271..425 CDD:279023
MAM 272..422 CDD:99706
LDLa 457..490 CDD:238060
MAM 577..729 CDD:279023
MAM 577..728 CDD:99706
MAM 734..890 CDD:279023
MAM 734..888 CDD:99706
MAM 889..1055 CDD:214533
MAM 894..1055 CDD:99706
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I9778
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.