DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and RABA5E

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_563750.3 Gene:RABA5E / 837091 AraportID:AT1G05810 Length:264 Species:Arabidopsis thaliana


Alignment Length:177 Identity:70/177 - (39%)
Similarity:113/177 - (63%) Gaps:11/177 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERFRSLT 71
            |::|||:|.||||:|:.|:..|:|..|...|||::|:::.|:::|.:.|..:|||||.||||::|
plant    60 KIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVT 124

  Fly    72 PSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKIDEE--RVVDREEGRK 134
            .::||.|:||::|||||.|.:...:..||.||..:||. .:|.::||||.|.|  |.|..|||:.
plant   125 SAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDT-TVARMLVGNKCDLENIRAVSVEEGKA 188

  Fly   135 FARKHRALFIETSA--------KCDQFVSDVFKDVVEKIVSSEYFNN 173
            .|.:....|:||||        ..:..:.|::.:|..|.::|:.:.:
plant   189 LAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKD 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 68/167 (41%)
RABA5ENP_563750.3 Rab11_like 56..220 CDD:206660 67/160 (42%)

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