DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and RABB1a

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_193449.1 Gene:RABB1a / 827427 AraportID:AT4G17160 Length:205 Species:Arabidopsis thaliana


Alignment Length:161 Identity:67/161 - (41%)
Similarity:104/161 - (64%) Gaps:3/161 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERFRSLT 71
            |.::||::|||||.|:.:|.:.:|...||:|||::|.:|.:.:|....|:.:|||||.|.|||:|
plant     8 KYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIWDTAGQESFRSVT 72

  Fly    72 PSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDREEGRK 134
            .|:||...|.:||||||.|::...|.:||.|...:: :.|:..:::|||.|  ::|.|..|||.:
plant    73 RSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHA-SENMTTMLIGNKCDLEDKRTVSTEEGEQ 136

  Fly   135 FARKHRALFIETSAKCDQFVSDVFKDVVEKI 165
            |||:|..:|:|.|||....|.:.|.:....|
plant   137 FAREHGLIFMEASAKTAHNVEEAFVETAATI 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 66/159 (42%)
RABB1aNP_193449.1 PLN03108 1..204 CDD:178655 67/161 (42%)

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