DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab18 and RAB8

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_190929.1 Gene:RAB8 / 824529 AraportID:AT3G53610 Length:216 Species:Arabidopsis thaliana


Alignment Length:209 Identity:77/209 - (36%)
Similarity:120/209 - (57%) Gaps:24/209 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |..||||:||:||||||.|:.||.:..|..:...|||:|||.:.:::||...|:.:|||||.|||
plant    13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSY-SDNPNIAIIVVGNKID---EERVVD 128
            |::|.::||.|:|.:||||:|...|...:..|:..::.: ||:.|  .|:||||.|   .:|.|.
plant    78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVN--KILVGNKADMDESKRAVP 140

  Fly   129 REEGRKFARKHRALFIETSAKCDQFVSDVF----KDVVEKIVSSE--------YFNNGNASAGLD 181
            :.:|:..|.::...|.|||||.:..|.:||    ||:.:::..::        ..|..:..||..
plant   141 KSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGTS 205

  Fly   182 IASDRDLEASASTC 195
            .|:.:      |.|
plant   206 QATQK------SAC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 70/166 (42%)
RAB8NP_190929.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 71/168 (42%)

Return to query results.
Submit another query.