DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and RAB1A

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_004152.1 Gene:RAB1A / 5861 HGNCID:9758 Length:205 Species:Homo sapiens


Alignment Length:165 Identity:70/165 - (42%)
Similarity:108/165 - (65%) Gaps:3/165 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |...|||:||:||||||.|:.||.::.:.:::..|||:|||.:.:::||...|:.:|||||.|||
Human     9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 73

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130
            |::|.|:||.|.|.|:|||:|.::|...::.||.|:|.|: :.|:..::||||.|  .::|||..
Human    74 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYT 137

  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKI 165
            ..::||......|:|||||....|...|..:..:|
Human   138 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 68/160 (43%)
RAB1ANP_004152.1 Rab1_Ypt1 10..175 CDD:206661 69/164 (42%)
Switch 1. /evidence=ECO:0000269|PubMed:22416225, ECO:0007744|PDB:3SFV, ECO:0007744|PDB:3TKL 34..48 3/13 (23%)
Switch 2. /evidence=ECO:0000269|PubMed:22416225, ECO:0007744|PDB:3SFV, ECO:0007744|PDB:3TKL 66..83 11/16 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..205
Blue background indicates that the domain is not in the aligned region.

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