DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and rab11b

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001011048.1 Gene:rab11b / 496458 XenbaseID:XB-GENE-491174 Length:218 Species:Xenopus tropicalis


Alignment Length:208 Identity:82/208 - (39%)
Similarity:122/208 - (58%) Gaps:14/208 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |...|:::||:||||||:|:.||..|:|:.....|||::|.::.:||||...|..:|||||.||:
 Frog     9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 73

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130
            |::|.::||.|:||:|||||....:...:|.||.||..::|| ||.|::||||.|  ..|.|..:
 Frog    74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADN-NIVIMLVGNKSDLRHLRAVPTD 137

  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDV---VEKIVSSEYF--------NNGNASAGLDIAS 184
            |.|.||.|:...||||||.....|.:.||::   :.:|||.:..        :.||....:.:..
 Frog   138 EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRSAHDESPGNNVVDISVPP 202

  Fly   185 DRDLEASASTCYC 197
            ..|.:.|:....|
 Frog   203 TTDGQKSSKLQCC 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 73/163 (45%)
rab11bNP_001011048.1 Rab11_like 9..173 CDD:206660 74/164 (45%)

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