DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and rab35b

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001003548.1 Gene:rab35b / 445154 ZFINID:ZDB-GENE-040801-62 Length:201 Species:Danio rerio


Alignment Length:169 Identity:69/169 - (40%)
Similarity:112/169 - (66%) Gaps:4/169 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |...|||:||:||||||||:.||.:|.|..::..|||:|||.:.::::|...|:.:|||||.|||
Zfish     6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVELNGEKVKLQIWDTAGQERF 70

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKIDE--ERVVDRE 130
            |::|.::||...|.::|||:||.:|.|.::.||.|::...|  ::..|:||||.|:  .:||:..
Zfish    71 RTITSTYYRGTHGVVVVYDVTSAESFVNVKRWLHEINQNCD--DVCRILVGNKNDDPNSKVVETN 133

  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKIVSSE 169
            :.:|||.:......|||||.:..|.::|..:.|.::.::
Zfish   134 DAQKFAEQMGISLFETSAKENVNVEEMFNCITELVLRAK 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 68/160 (43%)
rab35bNP_001003548.1 P-loop containing Nucleoside Triphosphate Hydrolases 3..201 CDD:476819 69/169 (41%)

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