DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab18 and Rab23

DIOPT Version :9

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster


Alignment Length:182 Identity:63/182 - (34%)
Similarity:106/182 - (58%) Gaps:11/182 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERFRS 69
            |||::::|..||||||:|:|:.:..|.:::..|||:||..:.:::||.|.::.||||||.|.|..
  Fly    37 AIKVVIVGNGGVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFDC 101

  Fly    70 LTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDREEG 132
            :|.::||.|..::||:..|.|.|...::.|..::::..:  .|..::|.||||  |:.||..:|.
  Fly   102 ITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENECN--EIPTVIVQNKIDLIEQAVVTADEV 164

  Fly   133 RKFARKHRALFIETSAKCDQFVSDVFKDVVEK---IVSSEY----FNNGNAS 177
            ...|:......|.||.|.|..|:.||:.:..|   :::..|    .|..|:|
  Fly   165 ETLAKLLNCRLIRTSVKEDINVASVFRYLATKCHQLMTQSYDQVAGNQQNSS 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 RAB 6..166 CDD:197555 58/164 (35%)
Rab18 6..165 CDD:206656 58/163 (36%)
Rab23NP_649574.1 Ras 50..199 CDD:278499 52/150 (35%)
Rab23_like 50..197 CDD:133306 51/148 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454416
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24073
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.