DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and Rab9Fa

DIOPT Version :9

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_727471.1 Gene:Rab9Fa / 326230 FlyBaseID:FBgn0052671 Length:197 Species:Drosophila melanogaster


Alignment Length:169 Identity:57/169 - (33%)
Similarity:94/169 - (55%) Gaps:9/169 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVA----LWDTAG 63
            |...|::::|:|||||:.|:.||.:|:|...|..|:|:|  .:...|:..|:::.    :|||:.
  Fly     5 DNPFKIIILGDSGVGKTCLLMRFSDNQFTTRHRSTVGLD--RRECSVEFADWRMGRMLQVWDTSD 67

  Fly    64 AERFRSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKIDE--ERV 126
            .|||:.|..:..|.|.|.:|||||||..|...::.|:.|:.....: .:.:::||||.|:  .|.
  Fly    68 DERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPD-KVTVLLVGNKSDDPNHRQ 131

  Fly   127 VDREEGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKI 165
            |...:|..:|.:....|.|.|||..:.|.|:|..:...|
  Fly   132 VSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDI 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 RAB 6..166 CDD:197555 56/166 (34%)
Rab18 6..165 CDD:206656 55/164 (34%)
Rab9FaNP_727471.1 RAB 8..171 CDD:197555 56/166 (34%)
Rab 8..167 CDD:206640 55/161 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454340
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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