DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and rab18a

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_996661.1 Gene:rab18a / 325255 ZFINID:ZDB-GENE-030131-3980 Length:205 Species:Danio rerio


Alignment Length:196 Identity:97/196 - (49%)
Similarity:136/196 - (69%) Gaps:6/196 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERFRSL 70
            :|:|:|||||||||||:.||.::.||.....|||:|||.|.:.|||...|:|:|||||.||||:|
Zfish     9 LKILIIGESGVGKSSLLLRFTDDTFDAEIGATIGVDFKVKTLAVDGNRAKLAIWDTAGQERFRTL 73

  Fly    71 TPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID-EERVVDREEGRK 134
            |||:||.|.|.|||||::.|::..||:.||:||::|....::..::|||||| ::|.::||||.|
Zfish    74 TPSYYRGAQGVILVYDVSRRETFAKLDNWLSELETYCTRNDLVKMLVGNKIDKDDREIEREEGLK 138

  Fly   135 FARKHRALFIETSAKCDQFVSDVFKDVVEKIVSSE-YFNNGNASAGLDIASDRDLEASASTC--Y 196
            |||||..||||:|||....|...|:::||||:.:. .:.:.:.|.|  :|.....|:|...|  |
Zfish   139 FARKHSMLFIESSAKTRDGVQCAFEELVEKILQTPGLWESMHKSRG--VALSELSESSQGGCGAY 201

  Fly   197 C 197
            |
Zfish   202 C 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 87/159 (55%)
rab18aNP_996661.1 Rab18 9..169 CDD:206656 87/159 (55%)

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